Ciona intestinalis (yellow sea squirt): 100181107
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Entry
100181107 CDS
T01056
Name
(RefSeq) THO complex subunit 6 homolog isoform X2
KO
K13175
THO complex subunit 6
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100181107
09122 Translation
03013 Nucleocytoplasmic transport
100181107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100181107
03041 Spliceosome [BR:
cin03041
]
100181107
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100181107
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100181107
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT122_1st
WDR55
DSE1_N
Beta-prop_EML_2
Beta-prop_EML
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_NOL10_N
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_DCAF12
NBCH_WD40
TRM82_WD
ASA1
WD40_like
Beta-prop_RIG_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
100181107
NCBI-ProteinID:
XP_002126963
LinkDB
All DBs
Position
1
Genome browser
AA seq
326 aa
AA seq
DB search
MDKRLLLHTTVYSTAFSLCGTYVAAATNFGHIAVFNVQEAVASHGAESTPCFTFLAHSGP
IHSLVTAGKYLFSAGDGPITAWKWADVINRKPTKAFTLKDPQLLENESYNCVRYSNKDNC
IFAGGDDGITYKWDINTMKCKGRFSGHKDYIHDLAINSNNLVSASEDGTVKTWDIRSASC
TSTITPHKNKQLARPETGHFMSCVAVDENGEWLACGGGPHASLWHLRSKSMAGILQTSNT
NYISHRIMFYSDEIISVGNQPAVYRWSVNGEKKAEIPCSINRIFSISFQHGPGHSSEQLP
MVTAGNSYKLSMFTNLGYEGKRLSFV
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggataagagacttttattacacacgacggtgtacagcactgcgttttctttgtgcggg
acctatgtggccgctgcaaccaattttgggcacatagctgtgttcaatgtacaagaagcc
gtggcgtcccatggtgcggaatctacaccatgttttactttccttgctcacagtggacca
atacactctttggttacagcgggaaaatatttattcagtgctggtgacggtccaataacg
gcatggaaatgggcggatgtgataaacagaaaacctaccaaagcttttacattaaaagat
ccacaacttcttgaaaatgagtcttacaactgtgtacgatactccaataaagacaattgc
atattcgctggtggtgatgacggtataacctacaaatgggatatcaatacaatgaaatgc
aaaggcagatttagtggccacaaagattatattcatgatttggcaataaattcaaacaac
ttggtatctgcatctgaagatggaacagtaaagacatgggacattcggtcagcatcatgc
acaagtacaattacaccgcacaaaaataagcaactggccagacctgaaaccggccatttt
atgtcatgtgtagcagttgatgaaaatggagagtggttagcatgtggtggtggtccacat
gcgtcattgtggcacttaaggtccaaaagtatggctgggattttacagacaagtaatact
aactacatctcccatagaataatgttctatagcgatgaaattatatcagttggaaaccaa
ccagccgtctatcgttggagtgttaatggagaaaagaaagcagagataccatgttcaatt
aacagaattttcagtataagtttccaacatgggcctggtcattcatccgaacagttacct
atggtcacagctggcaatagttacaaactgagcatgtttactaacttaggttatgaagga
aaacgactctcttttgtttaa
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integrated database retrieval system
