Ciona intestinalis (yellow sea squirt): 100181235
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Entry
100181235 CDS
T01056
Name
(RefSeq) protein RRP5 homolog isoform X2
KO
K14792
rRNA biogenesis protein RRP5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100181235
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
Other 90S particles
100181235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
TPR_19
UTP6_C
TPR_CcmH_CycH
NRDE-2
ARM_TT21
PPR
Mad3_BUB1_I
TPR_16
ExsA_N
Motif
Other DBs
NCBI-GeneID:
100181235
NCBI-ProteinID:
XP_002123749
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MGFVSKLHLSDIILQHPEKIFNEGNVIRCRVLTSSAKRRHLHLTHKQSLVGSKLPIVTNY
DVIKRDDVIHGFISNIKPFGCFVKFYDDVTGFVPHHQLSATPVQNPQKLFFIGQVVKCRV
ISNDAGNKKLKLSFRTMNEKRVVEHNVKPGMMVNVKVIMKEQSHLSVKIMGDESEQSDWP
TAMISQYQLSDFVEISRSIFTLVREETVLNDCIVVATKQQIQVSRKHSLVERGLKVDFCD
LIIGQLLRCFVRQITSYGVFVETVGGLVGLCPKSAICDKYLADVNDRFITGQSVVAVVTG
IEDDRKRFLVSLRLSQCPLIDEQPIISQYSDEMKKIKKFFPKDKLKVGDLVTVATKDGTR
SIEGIPGFEVRGDITEDSTAIVVHKDFATKVLFVTNKMPVVDFYSSSKQKVKEMLERQIR
AQVLFFNDDIIMGFVVNNGRLVQVFRKNHWNEKKVLVEIGQNINIEIIQRKNLLLGKIQE
SSSDVGDFPFLDISVGSKVRGEVASIRATTAIVKLTSLPIVHGHHQVGRIHASEVFEECK
QNVSPMNNLKVGDTISCTVIGVRDVMTHRFLEITNRKATRGVIELSLWRSVPPPGDKIDA
EFPVGKKTKVFVKNFDRSRESYLVEVRPGVRGFIPKLLAMDGGKMGQGKMKQGRCVECIV
VKHGDPIMFACRGALTNGVGEDVCDIAVGHVTNGEIREIVADGALVRMELRGKGKIFSTD
ISDEFLDGMLKNFRVGQIIRCRVIGRSNEGFVLTMRKSLMHEICDLEPVDRDICDITDVK
PKQIFRGIIKVCSESGIFVTLSRCVHGRVTFANASKFYISDHTEAIKIFYPGRIVHCCVI
SVSPQDGRVELSMLERDTGHCDIINDENRFPLRLKRKREETKTQQKKKKTRILKSAPKSS
VENLIKQSEFKEDNIKVATTVGDCDVIEPGFVWDDDVTIDSNKEDIMTTDNEICSKRKVN
DDNPPESAVEWEKLLLLHHNESMLWIRFMAFHLRSREIEKARNVAEKSLTLIDRSAENER
LNIWSALLNLENNYGCDVTMKQTMERALKCSDQLKVYFRVVKIYEESGKKEKAGEMLEKM
TNKFRQNKEVWLAHIRHQMEESHYKEAQESLKRCLLSLPKKQNLEIISKFAQMEFTLGEA
ERGRTMFENILENYRKRTDIWSIYVDALVKAGMYDAARDVFNRVTSLSLSSKKMKTFYRR
FVEFETKHGNDDDAKIVKEKALKYAESLVEQVMAE
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgggttttgtgtcaaaacttcatttatcggacattattttgcaacatccggagaaaatt
ttcaacgagggaaacgtcatccggtgtcgagtgttaacatcgtcggcgaaacgtcgacat
ttgcatctcacgcataaacaatcgctcgttggatcaaaacttcccattgttaccaattat
gatgtcataaagcgtgacgacgttattcatggattcatttcgaatattaaaccttttgga
tgtttcgtaaaattttacgatgatgtcacggggttcgttccgcatcaccaactttcggcg
acacctgttcaaaatccacagaaattatttttcataggacaggtcgtaaagtgccgtgtc
atctcaaacgatgctggaaataaaaagttgaaattatcgtttcggacgatgaatgagaaa
cgtgtagttgaacataacgttaaacctggaatgatggtaaatgttaaagtaataatgaag
gaacaatcacatttgtcggtcaaaataatgggcgatgaatccgagcaatctgattggccg
acagcaatgatctcacaatatcaattatccgactttgtcgaaatatcgagaagtattttc
acactagttcgcgaggaaacggttttaaatgactgtatcgtcgtggcaaccaaacaacaa
atacaagtatctcggaaacatagtttggttgaacgaggtttaaaggtcgacttctgtgac
ctcataatcggacaattgttgagatgtttcgttcgtcaaattacgtcgtacggggttttc
gttgaaactgtcggcgggttggtcggtctgtgtcctaagtcggccatttgtgacaagtat
ctcgctgacgtaaacgaccgattcataaccggccaatcagtggttgccgtggttacaggg
attgaagacgacagaaaaagatttttggtttctcttcgattgtctcaatgtccattgatc
gatgaacaaccaatcatatcccagtattctgacgagatgaaaaaaatcaaaaagtttttt
ccgaaagataaattgaaagttggagatcttgttaccgtggctacgaaggatggaacgaga
tcaatcgaggggattcccgggttcgaggttcggggtgacatcacagaggattcaacagca
attgtcgttcacaaagattttgcgacgaaagttttgtttgttacaaacaaaatgccggtt
gttgatttctattcttcatcaaaacaaaaagtaaaggaaatgttagaacgacaaattcgc
gctcaagtattgttttttaacgatgacatcataatggggttcgttgtcaacaatggacgt
ttagttcaagtgttccggaaaaatcattggaacgaaaaaaaagttttggttgaaattgga
caaaatatcaacatagagatcatacaaagaaagaatttgcttttgggtaaaattcaagaa
tcgagtagtgatgttggggactttcccttccttgatataagtgtggggtcaaaggtcaga
ggtgaggtggcatccatccgagcgacaacagcgatcgtcaaacttacatcgttaccaatt
gtccatggacaccaccaagtggggagaattcacgcatcggaagttttcgaggaatgcaaa
cagaacgtttctcccatgaacaacttgaaagtcggcgacacaatatcttgcactgtcatc
ggtgtccgagatgtgatgactcatcgatttcttgaaatcacgaacagaaaagccactaga
ggcgtcattgagctgagtttgtggcgctctgttcctccacctggtgacaaaatcgatgca
gaatttccagtcggaaaaaaaacaaaagtttttgtgaaaaattttgatcgaagtcgtgaa
agttatttggttgaagttcggccgggggttcgtgggtttataccgaagctactggcgatg
gatgggggtaagatgggacaggggaagatgaaacagggtcgatgtgtcgagtgtattgtt
gtaaaacacggagatccgataatgttcgcttgtcgaggagcgctaaccaatggggtcggg
gaagatgtttgtgacatcgcggtgggtcatgtgacaaacggggaaatccgggaaattgtt
gcagacggcgccctcgtgaggatggagttacgaggaaaaggaaaaatattttcaaccgat
atttccgatgaattccttgacggaatgttaaaaaattttcgtgttggacaaattataagg
tgtcgtgtgattggtcgatcaaacgaggggtttgtgcttaccatgcggaagtcactcatg
cacgaaatatgtgacctggaaccagtggaccgtgacatttgtgacatcacagatgttaaa
ccaaaacaaatatttcgaggaataattaaagtttgttccgagtcgggaatcttcgttact
ttgtcacgatgcgttcacggtcgagtgacttttgcaaatgcgtcgaaattttacatttcc
gaccacacggaggcaataaagatattttaccctggaagaattgttcattgttgcgtaata
agtgtttcaccacaagatggcagagtggagttgtcaatgttggaacgagacacagggcat
tgtgacatcatcaacgacgagaatcggtttccgttgcgtttgaaacgtaaacgcgaggaa
acaaagactcagcaaaagaaaaaaaaaactcggattttaaaatcggcgccaaaatcttcg
gttgagaatttgatcaaacaatctgagtttaaggaagacaatataaaggttgcaactact
gtgggtgattgtgatgtcatagaaccgggctttgtttgggatgatgatgtcacaatcgat
tcgaacaaggaagatattatgaccacagacaatgaaatttgttcgaaaagaaaagttaac
gacgacaatccaccagagagcgctgtggagtgggagaaacttctattattacatcataat
gaatcaatgttgtggattcggttcatggcgtttcatttgcggtcgagggaaattgagaaa
gctcgaaatgtcgctgagaaatcgctgactttgattgatagaagcgcagaaaacgaacgt
ttaaacatttggtcagccttgttgaacctggagaacaattatggttgtgatgtcacaatg
aaacaaacaatggagcgagcgttaaaatgttccgatcaacttaaagtttattttcgtgtc
gtcaagatttacgaggaatcaggaaagaaagagaaagccggggaaatgttggaaaaaatg
acgaataagtttcgtcaaaacaaagaagtttggttggctcacatacgccatcaaatggag
gaatctcactacaaggaggcacaagagagcttgaaacgatgcctcctaagtttgccaaag
aaacaaaatttggaaataatatcaaagtttgcgcaaatggagttcacgctcggtgaagca
gaacgtggccggacgatgttcgaaaatattcttgagaattatcggaaacgaacggatatt
tggtcgatatatgtcgatgcattggtgaaagcgggaatgtacgatgctgctagagatgtt
tttaatcgggtgacctcattgtcgctgtcgagcaaaaaaatgaaaactttttaccggaga
tttgttgaatttgaaacgaaacatggaaatgatgacgatgcaaaaattgtgaaagagaaa
gcgttaaaatatgctgagtcactcgtcgaacaagtgatggccgagtga
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