Ciona intestinalis (yellow sea squirt): 100181243
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Entry
100181243 CDS
T01056
Name
(RefSeq) small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100181243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100181243
03041 Spliceosome [BR:
cin03041
]
100181243
03032 DNA replication proteins [BR:
cin03032
]
100181243
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
100181243
Spliceosome [BR:
cin03041
]
Complex A
U1 snRNP components
Sm proteins
100181243
U2 snRNP components
100181243
Complex B
U1 snRNP components
100181243
U4/U6.U5 tri-snRNP components
100181243
Complex C
U2 snRNP components
100181243
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
100181243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Nbas_N
Motif
Other DBs
NCBI-GeneID:
100181243
NCBI-ProteinID:
XP_002124025
LinkDB
All DBs
Position
4:191014..191534
Genome browser
AA seq
87 aa
AA seq
DB search
MSTLPMNPKPFLNGLTGKPVLVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVEGALSGHL
GEILIRCNNVLYIKGVEEEDEDGEMKE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccttaccaatgaacccaaagccctttctaaatggtttaaccgggaaaccagtt
cttgtaaaactgaagtgggggatggaatacaaaggatatctagtatctgttgatggttat
atgaatatgcagcttgcaaatactgaagaatttgtggaaggggccttgtcagggcatctg
ggtgaaattttgattcgttgtaataatgttctttacatcaaaggtgttgaggaagaagat
gaagatggtgaaatgaaggaataa
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