Ciona intestinalis (yellow sea squirt): 100181276
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Entry
100181276 CDS
T01056
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03440
Homologous recombination
cin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100181276
03460 Fanconi anemia pathway
100181276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100181276
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100181276
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
100181276
FA (Fanconi anemia) pathway
Downstream FA components
100181276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-GeneID:
100181276
NCBI-ProteinID:
XP_002120239
LinkDB
All DBs
Position
14:2344669..2348657
Genome browser
AA seq
1145 aa
AA seq
DB search
MMEEKPHVELMIGGVKIHFPFKPYPSQLSMMSMIVKGLQRSEHCLLESPTGSGKTLSLLC
SALAWQQDLAMRLQKKEELYEQSNVDCAEEECCSIEQPPKEKEKVPTIWFGTRTHKQIAQ
ITHELATTQYRHVNMSILSSREHACIHPLNSQSKTKNEGCKELRKGIHPDLPGTHCIFYQ
NVNRLRSHASLKNCGITQAWDLEDLVKLGTRVKSCPYYAARELQKTASIIFCPYNYLIDP
SIRSSMQIDLQNDIVILDEAHNIEDSSREAASFTAVETDLMSTVADLEHLISVESNVEEH
QKLHLVLSKMGGWMNKHVKDLKESAYETWSKVWTGEDFIPHLDEWGITADTLSLLVEAFL
KAVETKEEEEGGVEEEKKEMIMHSMSKSFLGALFDVLTYILASSKKFAGDYRVTMIRTAQ
FGIPPPKRTRDGWVTINKRKSKFFLLKLHFWCLNPAVAFTDLADTRCIILTSGTLSPMSS
FSSELGLAFPIQLEAAHVISNSQVFVGSLGCGPNGHRLQATYQNTNSLDFQDELGKLVQS
VCNVVPYGVLCFFSSYKMLEKLCERWKNTGLWYDICQKKEIVCEPHGRNKADFDGVLQNF
YHTVAMVGTSDLTGALFLAVCRGKASEGLDFANNNARAVITVGIPFPNYRDKQVELKKTY
NNFHCQDRGLLTGNDWYEIQAFRALNQALGRCIRHRNDWGALIIVDDRFCQNPRKYCKGL
SKWVRQKVKSYDKFKVFEESLANFCQRQSKQENEKENLSLTFTQSAFASTSTQIQSTIVE
PFNQSQKSKISDHFSIKDKLATCLSIGKENKPEIPKTELQFLSDPEIKPIKTENAVKPEY
EASETKPNLRKFKFKLEPKNSSNPEIKPIKIENQVKPEYDSSETKFTKRKFKFEHKKSLN
TDASVKDNKNKQNNDVIVITNTPEKEDILIVPESPEIKSDNEEDDFKEPFSASSKRSRSR
SHDLSKNNRGKNTIASQLAKKCKLSLDFKDVENPLKEEEILSVKEKKKRRTKRSFNNFDD
DLRGLNTSKAILQTVMSCLCSEVICSAKECDITEVKQDFNLVLLYSSGDTLIAVDQTLVP
NLSYMSHTLTNSATLNCAWSEVDKHAFRIFQCIACNEVIAVQVVSHATLSNKVLFMPQTV
SLTEK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagagaaaccacacgtggaactgatgattggaggagtaaagattcattttcca
tttaaaccttatccgtcacaactctcaatgatgagcatgattgtaaaaggtttacaacga
tcagagcattgcttgcttgaaagtccaacaggaagtggcaagactttgtcacttctttgc
tctgctttggcatggcaacaagatctagcaatgcgattgcagaaaaaagaagaattgtat
gaacaatcaaatgttgactgtgctgaagaagaatgctgttccattgagcaacccccaaag
gaaaaggaaaaagtgcctactatatggtttggaacaaggactcacaagcagatagctcaa
attacccatgaactagctacaacccagtataggcatgtaaacatgagtatactatcaagc
agggaacacgcttgcatacatccattaaatagtcagtcaaaaactaaaaacgaaggatgt
aaagaactacgtaaaggaattcaccctgacctacctggaactcactgcatattttaccag
aatgtcaacaggctaagaagtcatgctagtttaaaaaactgtggcataactcaagcatgg
gatttagaggatttagtgaaacttggaaccagagtaaaatcatgtccatattatgctgca
agggagctgcagaagacggcatctattatattttgcccttataattaccttattgatccc
agtattaggagtagcatgcagattgaccttcagaatgacattgttattttagatgaagca
cacaatatagaagatagttcaagagaagctgcaagctttactgcagttgaaactgattta
atgagcactgtggcagaccttgaacatttaatttctgttgaatcaaacgtggaagaacat
caaaaactacacttggtgttatcaaaaatgggaggctggatgaacaaacatgtaaaggac
ctgaaagagtctgcatatgaaacctggtccaaggtttggactggagaagattttattccg
catttagatgaatggggaatcactgctgatacattaagcttacttgtggaggcatttttg
aaggcagttgaaacaaaggaagaagaggaagggggagtagaagaggagaaaaaggaaatg
atcatgcattcaatgagcaaatcctttcttggagcattgtttgatgtcttgacatatatc
cttgcttcttccaaaaagttcgcaggagattacagagttacgatgatacgaactgctcag
ttcggtattcctcctccaaaacgaacaagagatggctgggttacaattaacaaaagaaag
tcaaagttttttctgcttaaactgcatttctggtgtcttaatcctgctgtggcattcaca
gatttggcagacacaagatgtatcatcttaacttctggaactctgtcccctatgtcttca
ttttcttcagagcttggtttagcattcccgatccagttagaagccgcacatgtcatttct
aattcacaagtatttgtgggctcccttggttgtgggcctaatggtcacagactgcaagca
acttaccagaatacaaacagtttggatttccaagacgaacttggtaaattggtgcaatcg
gtttgtaatgtggttccttatggcgtgttatgtttcttctcaagttataaaatgctagaa
aaactctgtgaaagatggaaaaacacaggtttgtggtacgacatctgtcaaaagaaggaa
attgtttgtgaacctcatggtcgtaacaaagcagattttgatggagttctacaaaatttc
taccatactgttgcaatggtgggaaccagtgatttaaccggtgcattatttctggctgtt
tgtcgaggcaaggcaagtgaagggttagattttgcaaacaataatgcacgtgctgtaatc
acagtgggcataccatttcctaactaccgtgacaagcaagtggaactaaagaaaacctac
aacaactttcattgccaagacagaggtttacttacaggaaatgattggtatgaaattcag
gcattcagagctttaaatcaagctctaggtcgctgcattcgtcatagaaatgactgggga
gcattgattatagtggatgaccgcttctgtcaaaatccaaggaaatactgtaaaggcttg
tcgaagtgggttagacagaaagttaaatcttatgacaagtttaaagtttttgaagagtca
ttggcaaacttttgccaaagacaatctaaacaagaaaatgagaaagagaatctttccctc
acttttacccaaagtgcatttgcatccacttcaacccagatccaatctacaattgtagaa
ccattcaaccaaagccagaagtcaaagatttcagatcatttttctataaaagataaactt
gcaacatgcctttcaattggaaaagaaaacaaaccggaaattcctaaaactgaacttcaa
tttttgtcggaccctgaaatcaaaccaattaaaactgaaaatgcggtgaagccagagtat
gaggcaagcgaaactaaacccaacctaagaaaatttaaatttaaattggagcctaaaaac
agttcgaaccctgaaatcaaaccaattaaaatagaaaatcaggtgaaaccagagtacgat
tcaagcgaaactaaattcaccaaaagaaaatttaaatttgagcacaaaaaaagtttgaac
actgatgcatcggtcaaggacaataaaaataaacaaaataatgatgtcattgtgattacg
aacacccctgaaaaggaggacattttaattgttccggaatccccagaaattaaatccgac
aacgaagaagatgactttaaggaaccattttccgcctcaagtaaaagatctagatctcgt
tctcatgatttgagcaaaaacaacagaggaaaaaatacgattgctagtcagcttgccaaa
aaatgtaaactctctcttgattttaaagatgttgaaaaccctttaaaagaagaagagatt
ttatctgtgaaagagaaaaagaaaagacgtaccaaaaggtcttttaataactttgatgat
gatttacgaggtttaaatacttctaaagctattctacaaaccgttatgtcatgtctttgc
agtgaagttatatgttccgccaaggaatgtgacattacagaagtaaaacaggactttaat
ttggttttattgtactcaagtggggacaccttaatagcagtggatcaaacacttgtgcca
aatctatcttacatgtcgcacacacttacaaatagtgccacattaaactgtgcatggtct
gaagtagacaaacatgcttttcgtatattccagtgtatagcgtgtaatgaagtaattgct
gtacaagtagtgagccatgcaactctatctaacaaagttctttttatgcctcaaactgtg
tctttgacggagaaatag
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