Ciona intestinalis (yellow sea squirt): 100181294
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Entry
100181294 CDS
T01056
Name
(RefSeq) intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cin03037
]
100181294
Cilium and associated proteins [BR:
cin03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
100181294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
TPR_8
TPR_16
TPR_6
TPR_14
TPR_19
TPR_7
ANAPC3
TPR_11
TPR_10
TPR_17
ARM_TT21_5th
TPR_15
TPR_CcmH_CycH
TPR_9
TPR_MalT
ARM_TT21
TPR_21
Coatomer_E
DUF2989
TPR_EMC2
ARM_TT21_N
RPN7
ARM_TT21_4th
ARM_TT21_2nd
HAT_PRP39_C
RNPP_C
DUF6377
ARM_TT21_C
DUF2225
HECW_N
Motif
Other DBs
NCBI-GeneID:
100181294
NCBI-ProteinID:
XP_002129474
Ensembl:
ENSCING00000002712
LinkDB
All DBs
Position
1:complement(62379..66955)
Genome browser
AA seq
833 aa
AA seq
DB search
MSGLANVRLASEDGNDDLYGGFNDYNPIFDTKNLGEDEGFVQAVKTSHGRRPPMTALRGA
GGFAKPPMGTAAGLRANLASSVGRVPSDSDIGARPMTSVSGAGFSSAPKRGVFGGSAFDP
LNQATRGIAGVAQPLDGLEEETAEMKIKAMERAIGELIEESAIANNKGDFLTAKQKAIDA
GKKERQLVRHREQAGLSEGISLELTFSVLFNLACQYEANEMYPEAINTYNVIVKNKMFSN
SGRIKVNIGNIYFKQGQLAKAIKYYRMALDQVQTSHKETRIRIMQNIGAVFVKMGQYNDA
VTSYEHIMSEKPDFQSGLNLILCYFALGDKDKMSKAFLKLLSVNLGIEDEDKYTVSTDNA
QESVFLDAIRNDSLRQLERSRKLIAERCILAAAKIIAPSIESSFSEGFDWCVEQVKASPY
HDLANDLEIHKALMYLKERDFNQAVSILKTFEKKDTHVKSQAATNLSFIYFLQGNAENAK
RYADAAVKADRFNATSLTNKANCLYREGDAEGAVTLYKEALENDSSCHEALYNLGLVNKS
LGRLDDSLDSFMKLHNIVRNSAQVMFQIASLYEMMEDGTQAMEWLMQCVGIVPTDASVMS
RMADICENEDNGDRTQAFAYRMDSYRLFPADIDTVEWLGGYYVESQFSEKAIKYFERAAV
IQPNEVKWQLMVASCYRRSGNYQGAFEKYKQIHGKFPDNIECLKYLNRLCSDLGLNKELQ
EFANKLRKAEKNHEAKAQRAESASKRGKSLKAPDSADSSGGSRGNSASGGGSARQRRVIS
EINIQENGRKNIDASYSDPLGPAVERPKTAARSRTDNNDDFDDVEIDDNLLPD
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggcttgccaatgttcggttggcatctgaagatggaaatgatgatttgtacgga
ggttttaacgactataaccctatttttgacactaaaaacctgggagaggacgaagggttt
gtgcaagctgtaaaaaccagccatgggagaagacccccgatgactgctttgcgtggggct
gggggttttgctaaaccccctatgggtacggcagctggtttaagagcgaatctagcttct
tctgtaggaagagtgccaagtgattccgatatcggggcacgtccaatgacctcggtcagt
ggggctgggttttcgtctgccccaaaacgtggggtttttggagggagtgcgtttgaccca
ttaaaccaagctacgagggggatcgcaggggttgcgcaacctcttgatggattggaagag
gaaacagcggaaatgaagatcaaagccatggagagagcaataggggagctaatagaagaa
agtgcgattgctaataataaaggtgacttcttgactgcaaagcaaaaagctatagatgcc
gggaaaaaagagcgacagttggttcggcatagagaacaagctgggttaagtgaaggaata
agtttagagctgactttttcagttctgtttaatcttgcttgtcaatatgaagcaaatgag
atgtaccctgaagcaattaacacgtacaatgttattgttaaaaataaaatgttcagcaat
tctgggagaattaaagttaacattgggaacatttatttcaagcagggacagctggcgaag
gctatcaagtattacaggatggccttggatcaagtgcaaacgagtcataaagaaaccagg
attcgaataatgcagaatattggtgcagtgttcgtgaagatgggccaatataatgatgct
gttacatcatatgagcatattatgagcgaaaaacccgactttcaaagcggtttgaacttg
attttatgttactttgctttgggggataaggataagatgagcaaagctttcttgaagctg
ctgtcagttaacctgggcatcgaagatgaggacaaatacactgtgagtacggataacgca
caggagagtgtgtttctggatgcgattcgaaacgactcattacgacaactggaaagaagc
cgaaaactgatcgcggagagatgtattttggcagctgcgaaaatcatagctccttccatt
gagagttcgttctccgaaggatttgattggtgcgtggaacaagtaaaagcgtccccttac
cacgatctggccaatgatcttgaaatccataaagcgcttatgtacctcaaagaaagggac
tttaaccaggctgtgagtattctgaagacatttgagaaaaaagacacacatgttaaatca
caggctgcaacaaatttgtcgttcatttatttcctacaaggaaacgccgaaaacgcaaag
cgatatgctgatgctgctgttaaagctgacaggtttaacgcaacttccctcacaaacaaa
gcaaactgcttatacagggaaggggacgcagaaggagctgttactttgtataaagaagca
ttggaaaacgattcctcgtgccatgaagctctgtataatctagggctggtgaacaaatca
ctcggcagacttgatgattctcttgatagctttatgaagttacataacattgtgagaaac
agcgcacaggttatgttccaaatcgcctccttatatgaaatgatggaagatgggacgcaa
gcgatggaatggctcatgcagtgtgtgggaattgtgccaacagatgcgagtgtaatgtcg
cgaatggctgatatttgtgagaatgaagacaatggagatcgcacacaagcgttcgcctat
cgaatggactcctaccgtctctttcctgctgatatagatacagtagaatggcttggcggg
tattatgtggaatctcagttctctgaaaaagcgataaagtattttgaaagagctgctgtg
atacaaccaaatgaggtgaaatggcaattaatggtagccagttgttatagaagaagtgga
aactatcaaggtgctttcgaaaaatacaaacaaattcatggaaaatttcccgacaacatt
gaatgtttgaaatatctcaacagattgtgttcagacctgggattaaacaaagaactacag
gagttcgcaaacaaattgagaaaagctgaaaagaatcacgaagcaaaagcccagcgtgct
gaaagcgcttcaaaacgtgggaaaagtctcaaagcacctgacagcgcagatagttcaggt
ggcagccgtggcaacagtgcctccggtggcggctctgcccgtcaacgccgtgtcatctcc
gaaataaatatccaagaaaacggtcgaaaaaatattgatgcttcgtatagtgatccatta
gggcccgccgtggagcgtccgaaaactgcagcaaggtctcggacggacaacaacgatgat
tttgacgacgtagaaattgacgacaatcttttacccgattaa
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integrated database retrieval system
