Ciona intestinalis (yellow sea squirt): 100181341
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Entry
100181341 CDS
T01056
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a isoform X2
KO
K03008
DNA-directed RNA polymerase II subunit RPB11
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03020
RNA polymerase
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100181341
09124 Replication and repair
03420 Nucleotide excision repair
100181341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100181341
03400 DNA repair and recombination proteins [BR:
cin03400
]
100181341
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100181341
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100181341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L_2
RNA_pol_L
VirK
SHNi-TPR
Motif
Other DBs
NCBI-GeneID:
100181341
NCBI-ProteinID:
XP_018672964
Ensembl:
ENSCING00000020531
LinkDB
All DBs
Position
2:complement(353730..356168)
Genome browser
AA seq
117 aa
AA seq
DB search
MPHQRLKHFFCLTAKKSKISITKDTKVPNAAHFTVNKEDHTLGNILRTQLLKDPKVLFAG
YKVPHPLEHKFILRVQTTGDYSPQEAFTNAITDLISEISLLEERFKATVRDRQQGIE
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
atgccccaccagcgtttgaaacatttcttttgtttgacggcgaaaaaaagtaagatttct
atcactaaagacacaaaagtccctaatgcagcacatttcacagtaaataaggaagatcac
acacttggaaacattttacgaacgcagctgcttaaagaccctaaagttttgttcgctgga
tacaaagttccccacccccttgaacataagtttattttaagagttcaaacaactggtgac
tacagcccacaagaagccttcacgaatgcgattactgatttaatcagtgaaatatcttta
ctggaggagaggtttaaagcaactgtaagagatagacagcaaggaatagaatga
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