Ciona intestinalis (yellow sea squirt): 100181422
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Entry
100181422 CDS
T01056
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03030
DNA replication
cin03410
Base excision repair
cin03420
Nucleotide excision repair
cin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100181422
03410 Base excision repair
100181422
03420 Nucleotide excision repair
100181422
03430 Mismatch repair
100181422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100181422
03036 Chromosome and associated proteins [BR:
cin03036
]
100181422
03400 DNA repair and recombination proteins [BR:
cin03400
]
100181422
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100181422
DNA Replication Termination Factors
ELG1-RFC complex
100181422
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100181422
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100181422
Check point factors
HRAD17(Rad24)-RFC complex
100181422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Viral_helicase1
AAA_22
AAA_14
Rad17
AAA_16
Mg_chelatase
AAA_24
nSTAND3
RuvB_N
ABC_tran
AAA_18
MeaB
AAA_11
AAA_30
AAA_assoc_2
AAA_19
MipZ
AAA_5
cobW
TK
KTI12
FtsK_SpoIIIE
AAA_25
ATPase_2
NTPase_1
AAA_28
DnaB_C
AAA_3
Zeta_toxin
AAA_23
SRP54
IstB_IS21
SNF2-rel_dom
CbiA
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
100181422
NCBI-ProteinID:
XP_002130063
Ensembl:
ENSCING00000004870
UniProt:
A0A1W5BJR6
LinkDB
All DBs
Position
Unknown
AA seq
336 aa
AA seq
DB search
MEAMECTESSAKPAYELPWVEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGPPG
AGKTTSIMCLARTMLGASYDVAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGKHKIII
LDEADSMTSGAQQALRRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQIL
SRLMEVIDKEGVRYDDSGLEALLFTAQGDMRQALNNLQSTHQGFSFINSDNVFKVCDEPH
PLLLKTMLDHCVKADLDEAYKTINHLWAMGYSPDDIITNIFRVLKTHDIPEYVKLEFIKL
VAETHMRIVQGVNSLLQLSALVARMCKICMKEQESA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggaagctatggagtgtaccgaatcttctgctaaacctgcatatgagttaccttgggtg
gaaaaatatcgtccaaccaagctgagtgatgtggtgggcaatgaagctacagtttcaagg
cttgaggtgtttgctaacgaaggaaatgtcccaaacattatcatagctggcccccctggt
gctggcaagactacaagcattatgtgtttggcgagaacaatgcttggtgcgtcgtatgat
gttgctgttcttgagcttaatgcatcaaatgacaggggaatagacgttgttcgaaacaaa
atcaaaatgttcgcacagaagaaagtcactttacccaaaggaaaacacaagattattatt
ttagatgaagctgatagtatgacaagtggtgcacaacaagctttaagaagaacaatggag
atttacagtaaaacaacacgctttgcactcgcttgcaatcagtcggataaaataatcgaa
ccaatccaatctcggtgtgctgttcttcgttatagcaagttgtcagatgaacagatttta
agtcgtttaatggaggttatagacaaggaaggtgtgagatacgatgacagtgggctggaa
gcgttgctgttcactgcacaaggggatatgagacaagctttaaacaaccttcagtcaaca
caccaaggcttctcgtttattaattctgacaatgttttcaaagtgtgcgatgaacctcat
ccacttctattgaaaacaatgctcgaccattgtgtgaaggcggatttggatgaggcttac
aaaactattaaccacctgtgggcaatggggtattcccctgatgacatcatcaccaatatc
tttcgtgttctcaaaacccacgatataccggaatacgtaaaactcgagtttataaagctt
gtggctgaaactcatatgaggattgtgcaaggtgttaactcacttcttcaactatctgca
ttagttgccaggatgtgcaagatttgcatgaaagaacaagagtcggcgtga
DBGET
integrated database retrieval system
