Ciona intestinalis (yellow sea squirt): 100181437
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Entry
100181437 CDS
T01056
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100181437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100181437
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100181437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
100181437
NCBI-ProteinID:
XP_026693423
LinkDB
All DBs
Position
14:314068..317933
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AA seq
707 aa
AA seq
DB search
MDEDQPAAKIQNVNEFSKQCLGSLMQFIKSSHGLPSAGDDHEFYTSFAVLKSKAESVILD
NLSENEGNSLAISNLIQQVRHSKAGDLAIYDHPYKYELQHFKPLSSQLEKPTPVKYGPID
PDSCIFVDQVNALHKLMDELKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIA
LRAELNILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALGLQRHSLD
YLLTHYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTGDPGLL
HKVIDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGKKDFRPQQIEALRLIFAWRDGLA
RQEDESCGYVLPNHMLLQIAEILPREAQGVLACCNPIPPLLRQHVLAVHQLVVEARNKVF
KSDNGGLEKVETRFPAPAKLEDDYSNLLHCPHDLSFQSRMETDSSMNMESSESKYSLVKN
SSLLGSFSEDGNVSDGDKSLNIVSTQSEVATPEIKQKVERINKEGWNPFLIYMPTDEADG
KVKRSLSESDASQRLTLKNMLSGNFVWKLKKLPGQEEEKKVVKEEPKTFGKILDVPSDAY
HDTQRQTQVLRKLVKQRGGLNKGLNTRHSSSLPETPVGSLRERVSEFVPDHYKGRKRGGY
HSPRGKNVQASPQKRPFTPHEYTDGDYKKFQKSKPRGDFRKRKFKRN
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaccagcctgcagccaaaattcaaaatgtgaatgaattttcgaagcaatgt
cttggttcattgatgcagttcattaaatcaagccatggcctcccatctgcaggagatgat
catgaattctacacaagttttgctgttttgaaatctaaagcagaatctgttattttagac
aacttaagtgaaaatgaaggcaattcactcgctatatccaaccttatacaacaagtacga
cattctaaagctggagacttagcaatatatgatcatccgtataaatatgaacttcaacat
tttaaacctttgtcctcacaactggaaaaaccaacccctgtcaagtatggcccaatagat
ccagattcctgtatatttgttgatcaagtaaatgcactacataagttaatggatgaactg
aaggaagcatcagagatagctgttgatttggaagctcattcatatcgttcgtatcaagga
ataacttgcttgatgcagttgtccacacgaacgaaagactacattgttgacacaattgca
ttaagagcggaattgaatattttgaaccaagtttttgcaaatcctaacatcattaaagtt
ttccatggagcggactcggatattatttggttacaacgtgactttgggatttatgttgta
aatctattcgatacgggtcaagcagcaagagcattaggccttcaaagacattctcttgat
tatcttcttacacattattgcaatgtacaagctgataaaaagtaccagctagctgattgg
aggattagacctttacctaaagagatgcttctatatgcacagggagacactcattacctg
ttatatgtatatgacatgatgaggttggatctcgttaaaactggggatcctgggttactg
cacaaagtaattgataaaagccgtgatatctgttgtttaaaatatgaaaaaccgatcact
aatgacacctctcatcttgttctgctggaaaaacataaaagaaggggaggaaaaaaagat
ttcaggccgcagcaaatagaagcgctgaggttgatatttgcatggagggatggactcgct
aggcaggaggatgagagttgtgggtatgtgttgcccaaccatatgctgctgcagatagcg
gagatattaccacgtgaagcacaaggtgttctggcttgttgtaaccccatcccaccattg
ctgcgccaacatgtgttggctgttcatcaacttgtagtagaagcaagaaataaggtgttt
aagtcagataatggagggctggagaaagttgaaaccaggttcccagccccagctaagttg
gaagatgattattcaaacttattgcactgcccacatgatttatcatttcaatcacgcatg
gaaactgattcatcaatgaatatggaaagttcggaatcaaagtattcgttggttaagaat
tcaagcttgttgggaagttttagtgaagatgggaatgtttcagatggcgacaaatcattg
aatattgtgagcacgcaaagcgaggtagcgactccggagataaaacaaaaagttgaaagg
ataaataaagagggttggaatcctttccttatctacatgcctactgatgaagcagatggg
aaggtaaagagaagtttgtcggaaagtgatgccagtcaaagacttaccctcaaaaatatg
ctctcgggtaactttgtgtggaaactgaagaagcttcccggacaggaagaggagaaaaag
gtcgtcaaagaagagccgaagacgttcgggaagatccttgatgttccatcagatgcgtat
catgatactcaacgacaaacacaggttttgaggaaattggtcaaacaacgtggtggtttg
aataaaggtctaaacactcggcattcttcaagtttgccggaaacaccggttggttcgtta
cgtgagagagtaagtgagtttgtgcccgaccattacaagggtcggaaacgaggtggctat
cattcacctcgtggtaagaatgtacaagctagcccacaaaagcgacccttcaccccacac
gagtatacggacggcgattataagaagttccaaaagtcaaaaccaaggggtgattttaga
aaacggaaatttaaaagaaactaa
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