Ciona intestinalis (yellow sea squirt): 100181726
Help
Entry
100181726 CDS
T01056
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100181726
Membrane trafficking [BR:
cin04131
]
Protein recycling
Others
EARP complex
100181726
Endosome - Golgi transport
Tethering complex
GARP complex
100181726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
DUF1664
COG5_N
DUF489
VPS51_Exo84_N
OTU
Laminin_II
Motif
Other DBs
NCBI-GeneID:
100181726
NCBI-ProteinID:
XP_002125959
LinkDB
All DBs
Position
1:7443009..7447735
Genome browser
AA seq
846 aa
AA seq
DB search
MNGTLVEDSLPDGEVKANASMQLTDEVQSVLNSVFPSTNPLEQSDFDVVRYINELFPTEQ
SLSNIDDVVNRVEAKITQVDHDIKTAVRRQTTAGIDGQASLEEAQTAIHELFAKIKNIKD
RAEQSEQMVKEITRDIKQLDLAKRNLTQAITTHNHLHMLMSGVETLQNLTRKRQFAEAGS
LLQGVLNVMEHFSKYKAIPTVRDLATRVDDLKADMTRLVLAEFESAFTISQGKAGINPVV
LREACDVADVLDPGVKRELLGKFIKNQLTEYQVLFEATQDVAWLDKIDRRYAWVKRVLID
FEDKXXKIFPTKWEVSERIAVEFCYITNKDLGNLMQRRAQEIDVKLLLFAIQRTTNFETL
LAKRLSGNTLRENLKHVVKLAVKENKVESTNPFLEDENSESETEAPAAEPEKMKEVENPF
IKLISSCFEPYLYIYIESQDRNLSELIAKFQEDFQVQCQQMKANSLNVESGVLSSCADLF
VYYKKCMVQCSQLSTGKPMLDLSLLFKKYLKEYASRILSGNLPKSTTNTALSGNITFSTV
TNLLKETASLKEVAEPSRLSSGELTLTCSILTTADYCLETSEQLETKLKEKVDAALVTNI
DFSEEKSVFSSVISSCIQLLVQDLETACEPPLAAMSKVFWTSVEHVGDQSAYVTAITSHI
KQTVPTVRANLSSARKYFTQFCIKFVNSFIPRFISSLYKCKPIGTVGAEQLLLDTHSLKT
ILLDLPSIFSQVARKPPTSYTKIVVKGMTKAEMLLKVVMTPHEPASNFVASCLRLLVDPD
QDTFQKILEMKGLRKIEQASILEAFRAQVPTHNYSSATLNASTTSNGDTDSMSRIRKLEK
LIKKRL
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtactttggttgaagatagtttacccgacggggaagttaaagctaatgcttcc
atgcaacttacagacgaagtacagagcgttttaaactccgtttttccaagtacaaacccg
ttggagcaatcagacttcgacgttgttcgttacattaatgaactctttccaactgaacag
tctttatcaaacattgatgatgtggtgaaccgagttgaagcgaaaattactcaagtggat
catgatataaagactgctgttcgaagacagacaacagcgggtatagatgggcaagcttct
ctggaagaagcacaaactgctattcatgagttgtttgcgaagattaaaaacataaaagat
cgtgctgaacagtcggaacagatggtgaaagaaataactagggacatcaagcaacttgat
ctggcaaaaaggaatcttacacaggccataacaactcataatcatctacatatgttgatg
agtggggtggaaacgcttcaaaacttgacaagaaaacgtcagtttgctgaagctgggagt
cttctgcaaggagtcctaaacgtgatggagcactttagcaaatacaaagctattcctact
gtgcgtgatcttgctaccagagttgatgatttaaaagcagatatgacacgactggttctg
gctgaatttgaatctgcgtttacaatatctcaaggtaaagctggaatcaaccctgtggtt
ctacgtgaggcttgcgatgtggccgacgttttagatccaggcgtgaagagagaacttttg
ggtaaattcatcaagaaccaacttacagagtaccaggtgttattcgaagcaacacaagat
gtagcttggttggataaaattgatcgccgatacgcttgggttaaaagggtacttattgat
tttgaggacaagnnnnngaaaatcttccctaccaagtgggaggtttcggaacgcatcgct
gttgagttctgttacatcacaaacaaggatctgggcaacctgatgcagcggagagcgcaa
gaaattgatgtcaaacttctgctctttgctattcaaagaacaacaaattttgaaactttg
ctggcgaagcgtttgtcggggaatacattaagggaaaatttaaagcatgtcgttaaactg
gcagtcaaggagaataaggtggagtcaacaaacccatttcttgaagatgaaaacagtgaa
tccgaaactgaagctccagctgcagaacctgagaaaatgaaagaagttgagaatcctttt
attaaattgatatccagctgttttgagccatacctttatatctacattgaatctcaagac
agaaatctttcagaacttatagctaagtttcaagaagatttccaagttcaatgccaacaa
atgaaagccaacagcttgaatgtggaaagtggagttctatcaagctgcgctgacttattt
gtgtattacaagaagtgcatggttcaatgctctcagttaagtactgggaaaccaatgtta
gatttaagcttgttgtttaaaaagtacctaaaagaatatgcttcacggattttgtccggc
aatcttcccaaatcaacaaccaacacagctcttagtgggaacataacattctcaactgtc
actaacttgttaaaggaaactgcaagcttaaaggaagttgctgaacccagcagacttagc
agtggtgaactgaccctgacttgttctattttaactacagcagattactgtttggaaacc
agtgaacaacttgagacaaaattaaaggaaaaagttgatgcagcgttggtaactaatatt
gatttctcagaagagaagtcagtttttagctccgtaatttcaagctgcatacaactcctt
gtgcaagatttagagaccgcctgtgagcctccattggccgctatgtccaaagtcttctgg
acatcagttgagcacgttggagaccagagtgcttacgtcactgctatcacttcccatatc
aaacaaaccgtgccgacagttcgtgcaaatttatcttcagcccgtaagtatttcacccaa
ttctgcatcaagttcgtcaactctttcattccgagattcatcagttctttgtacaaatgc
aagcccattggcactgtaggtgcagagcagcttcttcttgacactcactccttgaaaacg
attcttctcgacctcccttcaatcttttcccaagtagcgcgaaagccacccacctcctac
acaaagattgtggtaaaaggaatgacgaaggcagagatgctcctcaaagtagtaatgact
cctcacgagcccgcatccaatttcgttgcaagttgtcttcgacttcttgtcgacccagat
caagatacattccagaaaattcttgagatgaaaggtttgagaaaaattgaacaagcgtct
atccttgaagcttttagggctcaagttcccacccataattattcctctgccacattaaat
gcttccacaacatctaatggtgatacagactccatgtccaggattcgaaaattagaaaaa
ttaatcaaaaaacgtctctag
DBGET
integrated database retrieval system
