Ciona intestinalis (yellow sea squirt): 100181728
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Entry
100181728 CDS
T01056
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100181728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100181728
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100181728
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
100181728
NCBI-ProteinID:
XP_018671752
LinkDB
All DBs
Position
Unknown
AA seq
510 aa
AA seq
DB search
MSLADELLADLEDAGIDEDAVVDDNGEGDGIDDIEDVGVSMDTGQDSIDPNSIHSVARLS
STDQFKRVVQGIEDYCNKPQSSVAAGIIESNPEYKLIVESNNLTMEIDNEVNIIHKFTRD
YYSKRFPELDSLVPTPLEYIRTVKELGNDLEKYKNNEVLQQVMSNATIMVISVTASTTQG
KLLSEEELNRVFEACTMAEELMSAKLKILTYVESRMAFIAPNLTAIIGSSVAAQLMGVAG
GLVALTKMPACNVMLLGSQKRTLAGFSSTAISPHTGFIYHSEMVQSMPADLRRKAARLVS
AKITLAARVDSFHETPDGSTGFEFAQEIKAKFEKWQEPPPVKQIKALPAPIDPARKRRGG
RRYRKMKERLGMTEMHKQANRLNFAEIEEDAYQDSIGYSLGQLGKSGSGRIRAAQVDNKT
QVRISKTLQTKIQRANRAGSTTSVTWGGKSTVRDRGSGIASSVAFTPLKGIEIVNPNAAE
KKQEEEDGCSTYFSNTASFVKLKPRNVPSA
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttagctgacgagctcctagcggatcttgaagatgcgggaatcgatgaggatgcg
gttgtcgatgacaatggggagggggacgggattgacgatatagaagatgtaggtgtctcc
atggacacggggcaagatagtattgatcctaacagtatacacagtgttgcaagattaagc
agcaccgatcaattcaagcgagtggttcaaggtattgaagattattgcaataaaccccaa
tcatcagtagctgcggggatcattgaatccaacccagagtacaagctgatcgtggaatca
aataacttgactatggagatcgataatgaagtgaatattatacacaagtttaccagggat
tattattccaagaggttccctgaattagactccttggtaccaacaccccttgaatatata
agaaccgtgaaagaacttggaaacgatttagaaaaatacaaaaacaatgaagtattgcaa
caggtaatgtcgaatgccaccatcatggtgatcagtgtaacagcttccaccacacaaggc
aaactactcagtgaggaggaattgaacagagtgtttgaagcttgtacaatggctgaagaa
ctcatgtctgcaaagttaaagatattgacgtatgttgaatctaggatggcattcattgct
cctaatctcacagctattataggttcatcagtagcagctcaactaatgggtgtagcgggt
gggttggtggcattaacaaagatgcccgcatgtaatgttatgctgcttgggtctcaaaaa
cgaactttggctgggttttcaagcactgccataagcccacatacaggtttcatctaccac
agtgagatggttcaatcaatgccggccgatcttagaaggaaagcagcgaggcttgtgtct
gctaagatcactctagcggcacgtgtggacagtttccacgaaacgcccgacgggagcacg
gggtttgaattcgcgcaagaaattaaagcaaagtttgaaaaatggcaggaaccccctcct
gttaagcagatcaaagctcttcccgctcccattgatcctgcaaggaagaggagagggggg
aggaggtataggaagatgaaggagaggcttggaatgacagagatgcataaacaagcaaat
agattgaactttgccgagatcgaggaagacgcttaccaagatagcatcgggtattcactc
ggacaacttggaaagtctggaagtggaagaatacgagctgcacaggtggacaacaaaact
caagttcgaatctcgaagactttacaaacaaagatccagcgagcgaaccgcgctgggtcg
actacgtcggtcacatggggtggaaagtcaaccgtgcgcgacagaggttcggggatcgca
tcatctgtcgcgtttaccccattgaaaggaattgagattgtgaatcccaacgctgctgag
aagaaacaagaagaagaggacggttgcagcacttacttctctaacactgcttcctttgtt
aaacttaaaccaaggaatgtaccgagtgcttga
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