Ciona intestinalis (yellow sea squirt): 100181729
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Entry
100181729 CDS
T01056
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100181729
03015 mRNA surveillance pathway
100181729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100181729
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100181729
5.6.2.5 RNA 5'-3' helicase
100181729
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100181729
mRNA cycle factors
Common to processing body (P body) and stress granule
100181729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
UvrD-helicase
ATPase
DEAD
NPHP3_N
SLFN-g3_helicase
nSTAND3
AAA_16
NAT10_TcmA_helicase
AAA_22
SRP54
PhoH
UvrD_C_2
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
100181729
NCBI-ProteinID:
XP_009859399
Ensembl:
ENSCING00000021399
LinkDB
All DBs
Position
8:6105323..6125520
Genome browser
AA seq
1119 aa
AA seq
DB search
MSSVDAYGPSSQTLTFLDPDESGVLTAGGDTQASEYDFTDFTIPSQTQTQTQTQHSQSQL
DAGDNSQTQDVAGEDEGLVGRDDDLGGLQENIHIATQGVADLRFEEDDDEDGFYTRDLPE
HACRYCGIHDPNCVVMCNSTQKWFCNGRGNTSGSHIINHLVRAKCKEVTVHRDGQLGDSM
LECYNCGCRNIFLLGFIPAKADSVVVLLCRQPCANQTSLKDMNWDASQWQPLIQDRCFLS
WLVKIPSEEEQLRARQITAQQINKLEELWKENVDATIEDLEKPGVDEDPHAVLLRYEDAY
QYQNIFGPLVKLEADYDRRLKESQTQANVTIRWDIGLNKKRLAHFQLPKTDTDMKLMKGD
EISLRHLGTLWEGKGHVVKVPDNSSDEIAIELRSSVGVPLDKTGNFHVDFVWKSTSFDRM
QSAMKTFAVDEASVSTYIYHRLLGHEAEEQTLKTNLPKRFSAPGLPELNHSQVYAVKTVL
QRPLCLIQGPPGTGKTVTSATIVYHLVKSCGQRQVLVCAPSNIAVDQLTEKIHRTGLKVV
RLCAKSREAIDSNVSFLSLHNQVRSMESLPELQKLQQLKDETGELSSNDEKRYRALKRNA
ERELLQHADVICSTCVGAGDPRLVRFRFRSILIDESTQATEPECMVPVVLGAQQLILVGD
HCQLGPVVMCKKAANAGLAQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAGERMRKNLSFVWPSPDKPMFFYKTSGQEEIASSGTSYLNRTEAAVVERITTKFLK
SGIKPEQIGIITPYEGQRSYLVQYMQYSGSLHSKLYMEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARFGVIIVGSPKALSKQPLWNHLLTYFKEQRALVEGP
LGNLKESLMQFSKPRKLTNVLNPGGRYMSNAMWDAREALIPGGAYDRASTYNGAVPPRHQ
YFRTHDQMGMINQTTSIQAQQAVASLPVPVNMYMNPTIPPNYFHNGQAQGRPVAKGGRAP
RLSRTNRHPQAGSNPATQSQDMTQNFSQGALTQGYGTGLSMSQPISQGMSQLGLSQAELS
QDSYMAEEFRSQVDAALSQDSTYQGERAYTGQGLNFSQY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtgtagatgcttatgggccaagttcccagactctcactttcctggatcccgat
gaaagtggagtactaactgcagggggagacacgcaggcaagcgagtatgacttcactgac
ttcactattccatcacaaactcaaactcagacacaaactcaacacagccaaagccaactt
gatgctggggataatagccagacccaggatgtagcaggagaggatgaaggcttggttggt
cgagatgatgacttgggaggattgcaggagaacatccacatcgcaacacaaggagtagcg
gatctaaggttcgaggaagatgatgacgaagatggattttatacgagggatcttcctgaa
catgcatgcagatattgtggaatacatgaccccaactgcgtggtgatgtgtaactccaca
cagaagtggttttgtaatggaagaggaaatacatctggaagccacatcatcaaccacttg
gtgcgagctaaatgtaaggaggtaaccgtacatagagacggacaacttggcgactcaatg
ctagaatgttacaactgtggttgtaggaatatcttcttacttgggtttattcctgctaaa
gctgattcagtggttgttctcctatgcaggcaaccatgcgccaatcagaccagcttaaaa
gacatgaactgggatgcatcccaatggcaacctctaatccaggatcgctgtttcctttct
tggttggttaagatcccatcagaggaagaacaactacgtgcacgacagataacagcacag
cagatcaataagttggaagagttgtggaaggaaaatgttgatgcaaccattgaagatttg
gagaaacctggagttgatgaagatccacacgctgtgttgttgaggtatgaagacgcttac
caataccagaacatatttggaccactagttaagctggaagctgactatgatagaaggcta
aaggaatcccaaacgcaagccaacgtaactataagatgggatatcgggctcaataagaaa
aggttggcccattttcagcttccgaagacggatacagacatgaaactaatgaagggagat
gagataagcttgcgacatctgggaacactgtgggaagggaaggggcatgtggttaaagtg
cctgacaactcgagcgatgaaatagctattgaactgagatcatctgtgggggttcccctt
gataaaacagggaatttccacgttgactttgtatggaaatcaacctcatttgacagaatg
cagagtgctatgaagacatttgcggtagatgaggcatccgtatccacctacatctaccat
agactgcttggccacgaagctgaagaacaaacattgaaaacgaatcttccaaaaaggttt
tcagctccaggattaccagagctcaaccattcacaggtatatgctgtgaagacggtgctt
caaagacctttatgtttaatccaaggacctcctggcaccggcaaaactgtaaccagcgcc
actattgtttaccatcttgttaaatcatgtggacaaagacaggttcttgtatgtgctcca
agtaacatagcagtagaccaacttactgagaagatccatcgaactgggttaaaggtggtc
aggttgtgcgcgaagagcagggaagcgatcgattctaatgtttcgtttctatctctgcat
aatcaagtcagaagcatggagagcttaccagagctgcagaagctacaacaactgaaggac
gagacgggtgaattatcctctaatgatgagaagagataccgagcccttaagagaaatgct
gaacgggaattgctacagcatgctgacgtgatatgttctacttgtgttggagctggtgat
ccacgccttgtaaggttccggttccgttccatactgatagatgaaagcacgcaagcaact
gaacctgagtgcatggtgccagttgtgcttggagcacagcagttgatcttagtaggagac
cattgtcagttgggacccgtggttatgtgtaagaaagcagccaatgcagggctcgcccaa
tcactgttcgagaggctggtggtgctcgggattcggccaatcagattgcaggtacaatac
cgtatgcacccagctttatctgctttcccatccaatatattctatgaaggatctctacag
aatggggtcactgcaggtgaaagaatgaggaagaacctgagttttgtttggccatccccc
gataaaccaatgtttttctacaaaacatcaggacaggaagagattgcaagttctggtact
tcgtatctaaacagaactgaagccgcagttgttgaacgaatcacaactaagtttcttaaa
tccggcatcaaacctgagcagatagggattataactccatatgaaggccagaggtcttac
ttggtgcaatacatgcaatattcgggttccctccattctaaactgtatatggaggttgag
attgccagtgtggatgcgttccaaggtcgtgagaaggacttcatcatcctctcatgtgtg
agggcaaatgagcatcaaggcatcgggttcctgaacgatccacgaaggctgaatgtggcg
cttacaagggcaaggtttggtgtgatcatcgttggcagcccgaaagctttatccaagcaa
cctctgtggaatcacctgctaacttattttaaagaacaacgagctttggtggaaggaccg
cttggaaacctcaaagaaagtttgatgcagttttcgaaaccaaggaaactcacaaacgtt
ctgaacccgggtggaaggtacatgagcaatgctatgtgggatgcaagggaagcacttata
ccaggtggtgcttatgatagagcgtccacttataatggtgctgtcccgccacgccaccaa
tactttcgtacacacgaccagatggggatgatcaaccaaacaacgagcatacaagcgcaa
caagcagtagcaagcctacctgtacctgttaacatgtacatgaaccccactataccacca
aattacttccataatggacaggcacaaggtcgtccagtagccaagggtgggcgcgcccca
cgtttaagtcgcaccaatcggcacccacaagctggatccaaccccgcaactcaatcccag
gatatgacacagaacttctcacagggtgccctcacacaaggatatggaacaggtctctcc
atgagccaacccattagccaggggatgagccaacttggtctctctcaagctgaactatca
caggacagctacatggctgaggagttccgatcccaagttgacgcagctttgtctcaggac
tcgacttaccaaggagagcgagcttacaccggtcaaggtctcaatttctctcagtattag
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integrated database retrieval system
