Ciona intestinalis (yellow sea squirt): 100181789
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Entry
100181789 CDS
T01056
Name
(RefSeq) structural maintenance of chromosomes protein 5-like
KO
K22803
structural maintenance of chromosomes protein 5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100181789
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
100181789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_29
AAA_21
SMC_hinge
RsgA_GTPase
YwqH-like
AAA_27
Motif
Other DBs
NCBI-GeneID:
100181789
NCBI-ProteinID:
XP_026695844
Ensembl:
ENSCING00000008151
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MDGSTVSSAVTQASRRGRTERNSQFVVGSIIRINVQNFLTYDQCTFRFNPKLNVIIGPNG
TGKSSIVCAICIGLAGRTSLLARAKEIGDYIQHGKQQATIEVELYNVPHCAIIRRTLSHG
QNGKTASTWHLNGNQVNVKQIEETVGKLNIQLSNLCQFLPQERVSDFSKMNKIDLLENTQ
QAVCSTQMLEDHKWLKDFRLMEKEMDLRRENDQAYLDKLKQKNERVEQDVVRYKERKKLI
DQLDTLDKKHAWTVYEATRNKFVEKKRICSDLHAKNEEAKKETLPYVKSCEKLVEKMVEI
NKSMSKTSEELKATANKTKTIHNEINDKDESVAEKWSQFKELEKDENGRMKKIDHYKLQI
NGWTDELDQLEDTDVDSDINDLNHKIHATVTAIANFEHESNSIIERGKSRHWEIQNCEKR
LAKLNNMSSMRLEMLHRLNKHCYNAIIWLRENKGMFKGVIHEPIILLINMKDPKHAELVE
NHIAMRDLQAFVCEESEDNDLFIRELREKQNIKINVVKAPRSNGVLISSKGFQPKRQIKD
LKKWGFTSYLRDLFDAPDSVMAFLCKQYRVHDVPIGSDLTRSHVEQVTQTSGIGLFFIPS
IGDTPGCRYSVKRSKYSSNCVVGNTCLRKPQCLNINIDPVEIETVQNEMHSLKQESNQET
VRLQELKKKTKTMEIQDNELRKKKKSLQQQMNQRKTLQNKIKLKEANVAELETSFVNLKD
LREQVQQEVNEIILERRDLVIKFVKTITECVDKSVKKGWLQAKYAAHIRQKTKVEEKIYE
VERKNVELKRKVESAEEDKKELQKQAKQLLAEAKTKTGGNPDHLSIVFSSLPNSLTDIEN
MMHDYRSRLECCGDTDPKAFEEFNSRKAEIEKLCVKVSKLEKELLAHRADRDVVRDRWMS
ALQKIISKVNSSFSKYFASMGCSGEVDLHTDFPDDFDKYGIRIRVKFRASSSLQELNPFR
QSGGERSVSTMLYLVALQSIYNCPFRLVDEINQGMDPYNERRVFEVIVSSSSEASTSQYF
LITPKLLPNLTYNNHMSVHCVYNGAEMLPHNNWKISRFIRRRKQLKYEDEE
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggatggttctacagtgtcaagtgcagttactcaagcatcacgccgtggtaggactgaa
agaaattcgcagttcgttgtcggttctataattcgaattaatgtgcaaaattttctcact
tacgaccagtgtacgttccgttttaatcccaaactgaacgttattattggaccaaatgga
actggcaagtctagtatagtttgtgcaatatgcattggacttgcaggacggacaagtttg
cttgctcgtgcaaaggaaatcggcgattacattcaacatgggaaacagcaagctacaatt
gaagtggaactttataacgttccacactgtgcaataattcgtagaactttaagccacggg
cagaatggtaaaactgcatcaacatggcatttgaatgggaaccaggtcaatgtaaagcaa
atagaagaaacagtaggaaaactgaatattcagctttcgaatctgtgccagttcctacct
caagagcgggtttcggatttttcaaagatgaataaaattgatttgcttgaaaatacgcag
caagctgtctgttcgactcaaatgcttgaagaccataaatggctgaaggattttcgcctg
atggaaaaagagatggatttacgaagagagaatgatcaagcttatctggataaactgaaa
cagaaaaacgagagagttgagcaagatgtagttcggtataaagaacggaaaaaattaatt
gatcagcttgacactttggacaagaagcatgcttggacagtgtatgaagctacacgaaac
aaattcgttgagaaaaaaagaatttgttctgatttacacgccaaaaacgaagaagcaaaa
aaagaaactttaccttatgttaaatcttgtgaaaagctcgtggaaaaaatggtggaaata
aataagtcaatgtctaagacaagtgaagagctaaaagccactgcaaataaaacgaaaact
attcacaacgaaattaatgataaggatgaaagcgtggccgagaaatggtcccaatttaaa
gaattggaaaaagacgaaaatggaagaatgaaaaaaattgatcattacaaactacagatt
aatggatggacagatgagctggatcaattggaggacactgatgtggattctgatattaat
gatttgaatcacaaaattcacgctacagttactgcaattgctaatttcgagcatgaatca
aattccattattgagcgtggaaagtcaaggcattgggaaattcaaaattgcgaaaaacgg
ttggccaaacttaacaatatgagcagtatgaggcttgagatgctgcatagactgaataag
cattgttataatgcaataatttggctgagagaaaataaaggcatgttcaaaggtgtcata
catgagcctattattcttcttataaacatgaaagatccaaaacatgcagaactggtggag
aaccatatcgctatgagggatttgcaggcatttgtctgtgaagagtcagaagataatgac
ttgtttataagagaactgagagaaaaacagaacattaaaattaatgttgtgaaagcgcca
aggtccaatggtgtgcttataagcagcaaaggttttcaaccaaaacgacaaattaaggac
ttgaaaaagtgggggtttacatcttacctaagggacttgtttgacgcaccagactctgtg
atggcgtttctttgtaagcagtatcgtgtgcatgatgtgccaattggctccgatttgacg
cggtcccatgtggaacaagtcacccagaccagtgggattggtttgttcttcataccaagt
attggagatacacctgggtgtaggtattctgttaaaaggtccaagtacagttcaaactgt
gttgttggaaatacatgtttacgaaaaccacagtgtcttaatataaacattgacccagtt
gaaatagaaaccgtacagaacgaaatgcattcgctgaagcaagaatcaaaccaagaaact
gtgagacttcaggagttaaaaaagaaaaccaaaacgatggaaattcaggacaatgagttg
agaaaaaagaagaaatcgctgcagcaacaaatgaaccaacggaaaacattgcaaaataag
ataaaattgaaagaagcaaatgttgctgagttagagacgtcttttgtcaacctaaaagac
ctgagagaacaagttcaacaagaagttaatgagattatactggaacgaagagatcttgtg
attaagtttgttaaaaccataacagaatgtgttgacaagtcagtaaaaaagggctggctg
caagcgaaatatgcagcgcatataaggcagaagacaaaggtggaagaaaagatatacgaa
gtggaacggaaaaacgtggagttgaagcggaaagttgagagcgctgaggaagataaaaag
gagttgcagaaacaagctaaacaattgctggctgaagcgaaaacgaaaactggaggcaac
ccagaccatttgtcgattgtgttttcatctttgccgaactccctcactgatattgagaat
atgatgcacgattacagatcgcgtcttgaatgctgcggcgatacagacccgaaagctttt
gaagaatttaactcgagaaaagcggaaattgagaagttgtgtgtgaaggtttcgaaattg
gagaaggagcttctggcgcacagagctgaccgtgatgtcgtgcgtgatagatggatgtca
gctcttcaaaaaattatctcaaaagttaattccagtttttccaaatattttgcctccatg
ggttgttcaggagaagtagatcttcataccgatttccccgatgatttcgataaatacggg
attcgcatccgagtgaaatttagagcatcttcctcacttcaagagctcaatccttttcgc
cagagtgggggagaacgcagtgtctcgacgatgctgtatttagtagctctacaaagcata
tacaactgcccatttcggcttgtggatgaaataaaccaaggtatggacccttacaacgaa
cgcagagtgtttgaagtcattgttagttcatcttcagaggcctccacgtctcaatacttt
ctcatcacgccaaagttgcttcccaaccttacgtacaacaaccatatgagtgtgcattgt
gtttacaatggtgctgaaatgctgcctcataacaattggaaaatctcgcgctttattcgc
cgtcgtaagcaattaaaatatgaagatgaagaatga
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