Ciona intestinalis (yellow sea squirt): 100181889
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Entry
100181889 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup155
KO
K14312
nuclear pore complex protein Nup155
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100181889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100181889
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100181889
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
WDR55
TPR_WDR35
Motif
Other DBs
NCBI-GeneID:
100181889
NCBI-ProteinID:
XP_018669629
LinkDB
All DBs
Position
11
Genome browser
AA seq
1408 aa
AA seq
DB search
MMVFPNKETPKNEDCGSMQDAALIVSKKLQLDRESIDLTSQLNVTSIYSSVSSGLNDDDY
PVVEQLPIPLITDVRKVPLPPELVEQFGHMQCNCIMGIFPSIRRAWLTVDSDIFVWRYLD
GDDLAYFDGLSETILSIALVQPKQGIFKDHIKYLLVLATPLDIVMLGVSFADGDINSEMR
LLPDALFSLPSDGSYITNIVGSHNGRIFMGGRDGFLYEIAYQASGGWFSRKCNKINHSRS
RLSFLVPSLLNVWLSEEDSISQLVVDDTRNILYTRSEKGTITVYDLGQDGWGMSCVAQSS
LDSIRRRAVAIASGIEPSNLNELVHIAAVTLQESRQINLVAVTQAGVRLYFITCQPPTLP
PQPTTPSTTSPKQNLNINKFITRPSGLYLVHVRLPPGFTGSSVQRPTTVHSAHYNAGTLL
LSSTTGDDGVLWCINNDMFAFDAMLRETKINFRLDGRSWAIAEVANPPSPLSLAALPSDA
PPLPPPDPPIQVLQHIQTPAEYVIITAQGCHVFHKLRPVDQLRNLLNHFDPDSNTIHKFF
QIYNQGEAACCCIILSSSFVPSDRVIIDKAVAALMHHGGVALPKVSTNQLPSSLAHHTME
PMSPISGTHRQSTLMRTPGGLPVISTPMPGSHPPPLSRDARSPQQHPQSPVQQPAVDPNQ
VTFYSERQEGVFKMFSRIVRPLWEGRLVEDFVISEAGKEKRIVVSRVDEGTISLVIDHLV
SLRSFLSKHCLSQPSGREFSLHHHEHTIPRTLTHGYRTSDATIIAQQDAQRRQLEEAHVL
EIRSLKQLHSLCDQSIQVFGLWRLLLHHQIHVLFEALDKQAQPSLKLMTFSDVVLSGDSV
CKALISALVGQYIDDHSTIDXLSSQLRDICPNLYSPDDAICSKASELMSLARTSEAHHRD
EQLHEAAKLFQQVAYSVNLPHVIQQYYAVRFYSGVVELCLLAAHKRDEEGLALRLYLSLS
SGDEDVDPLVRKSYVARISCYKCITDMLDGLMVAAEGQLQSPSVPSQPGPPQPLINNENG
VGNLTPEEAQHHAESCLQLALNSEDELFHITLYEWMLRMHLTTQLLKVSSPFVEPFLKRV
ASSQENNSTLFGSMGTDLLWQYYERAGQFMKAAEILVHLAEKPGSDRDLVKRIEYLSRAK
MNSKSSTSHKSNRGKGQILQELEEKLEVAQIQLSTMENLKQLSEHEACEKLNFQLVDVTT
LYSEFADPFQLAECKLSIVHCAGLHDPNLVEALWQNIIEHELSKSNNSDTSVLLQHKMVE
LTKRYMASQRYFPIEFVVGLLEKISCSRGWILNWGVTCFLEARYSLSNLLNVYENVHSQK
LDCWSTLGSPHHLLYVVNELISLFLDNPMKYLTHHQQRRPFLNRSLDALAVNLVELCSLP
NPDEQVKQLIVRMRKTQASLENMQQRGR
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgatggtatttcctaataaagaaacgccaaaaaatgaagattgtgggagtatgcaagac
gcagctttaatcgtgtctaaaaaacttcaactcgatcgtgaaagcattgatttgacgtca
caacttaacgttacatcaatatattcaagtgtaagcagtggtttaaatgacgatgactac
ccagtagtcgaacaacttcccatccctcttataacagatgtgaggaaggtcccattgcct
ccagaacttgtggaacagtttggacacatgcaatgtaactgcatcatgggaatatttccc
tcaatacgtcgtgcatggttaactgtggattccgatatttttgtctggagatatttggat
ggtgatgacttggcttactttgatggattatctgaaacaatacttagtattgctttggta
caacctaaacagggaatattcaaagatcacatcaagtatctgcttgtactcgccacaccc
cttgatattgtaatgttgggtgttagttttgctgatggggacataaacagtgagatgcgg
cttcttcccgatgctctcttctctcttccatccgatggtagttacatcaccaacatcgtt
ggaagccacaacggtcgcatcttcatgggagggagggatggtttcctctatgagattgct
taccaggcaagtgggggttggttcagcaggaaatgtaacaaaataaatcactcgcgaagt
cgtttgtcttttctggtcccttctttgttgaacgtgtggctatcagaggaagactctata
tctcaattggtggtggatgatacaagaaatatactttacacacggtctgagaaaggaacc
atcacagtttatgatcttggtcaagatggttgggggatgagttgcgttgcgcaatcttcc
cttgattcaattcggaggcgggctgttgccatcgcaagtggaatcgaaccttcaaactta
aatgagttggttcacatagcagctgtcactttacaagaatctcgacaaataaacttggtg
gctgtgacccaagcaggtgttcgtctttactttatcacctgccaaccccccaccctacca
ccccaacctacaacaccatcgacaacaagtccgaaacaaaatcttaacataaacaagttt
ataactcgtccaagtggattgtaccttgtgcacgtccgcctccctcctggcttcactggt
tcatccgtgcaacgtcccacaaccgtgcactccgcgcattataacgctggaactttactt
ctatcctcaacaactggtgatgatggggtcttgtggtgtatcaacaatgatatgttcgca
ttcgatgcaatgttaagagaaaccaagatcaattttcgtctcgacggtcgttcttgggcg
attgctgaagtagcaaaccccccttccccattatcccttgctgctcttccatctgatgct
cctcctcttcctccacctgatcctcccatccaggtcctccagcacatccagactcctgca
gagtatgtcatcatcactgctcagggttgccatgttttccacaaactacgaccagtcgac
caacttcgaaaccttcttaatcatttcgacccagattccaacacaattcacaaattcttc
caaatttacaaccaaggagaagctgcttgttgctgcatcatcctctcgtcttcctttgtt
ccttccgatcgagttatcattgacaaagctgtggctgctcttatgcatcatgggggcgtg
gcactcccgaaagtatcgaccaatcagcttccgtcgtcactcgcccatcacacgatggaa
ccaatgtccccgatatcaggaacgcatcgacaatctacgctaatgaggacacctggtggc
ctaccagtgatcagcactccgatgcccggatcccatcctcctcctctatcaagagatgca
agatcaccacaacaacatcctcaatctccagtgcaacaaccagcagtagaccccaatcaa
gtaacattctactcagaaagacaggaaggagttttcaagatgttttccaggatagtccgg
ccattatgggagggaagacttgttgaggattttgtgatttcagaagctggaaaggaaaaa
aggattgtggttagtcgtgttgatgaggggacaatcagcttggttatcgaccacttggtg
tcactaaggagcttcctttcaaaacactgcttgtcccaaccatctggaagggagttttct
ctgcaccaccatgagcacaccataccacgcacactaacgcacggatatcgaacatctgat
gccactatcattgctcaacaagatgcacagaggagacaacttgaagaagctcacgtactt
gaaataagatcattgaaacaactacacagtttatgtgaccagtcaatacaagtgtttggt
ttatggagattattattacatcatcagatccatgtgttgtttgaagctttagataaacaa
gcccagccttcattgaaactgatgacgttttcagatgttgtgctttctggagattctgta
tgcaaagctttaatctcagcattggttggtcaatatattgatgatcattcaaccatagat
ngcctgagttcccaactacgtgatatttgtcccaatctatattcacctgatgatgctatt
tgttcaaaggcaagtgaacttatgagtttggcccgaacaagtgaagctcatcatcgagat
gaacaacttcatgaagcggcgaaactgtttcaacaagtcgcttattctgttaaccttccg
catgtaatacagcaatattatgcagttcgattttactcgggggttgtcgagttatgtctc
ctcgctgctcacaagcgagatgaggagggacttgctcttcgtttgtatctttctttatcc
tctggggacgaagatgtggatcctcttgtgaggaaatcatacgttgcaagaatttcatgc
tacaagtgtatcactgatatgctagatggcctcatggtggcagcagagggtcagcttcaa
tctccaagtgttcccagtcaacccggacctccccaaccactcataaataacgaaaacggg
gtcggcaacctcacccctgaggaagcgcaacaccatgcggaaagttgtctccagttggca
ctgaacagcgaagatgagttgtttcacattacattgtatgaatggatgcttcgtatgcat
ctcacaactcaactattgaaggtttcttccccatttgttgagcctttccttaaacgagtc
gcgtcaagtcaggaaaacaattctactttgttcggctcaatgggaactgacctgttatgg
caatattatgagcgtgccgggcagtttatgaaagctgcggaaatactcgtgcatttggca
gaaaaacctggctcggaccgagacctcgtgaaacggatcgaatatttatcacgggcgaag
atgaacagcaagtcctcaacgtcccataaatcaaatcgaggaaaaggacaaatcctgcag
gaacttgaagaaaaacttgaggttgcccagatccagttaagcacgatggaaaacctcaaa
caactatcggaacatgaggcttgtgagaaacttaactttcaactggttgatgttacgact
ttatacagcgagtttgctgatcctttccaactggcagagtgtaagttgtccatcgttcac
tgcgccggtttacacgatcctaatttagtggaagctttgtggcaaaatataattgagcat
gaattatcaaagtcaaacaactctgatacatctgtgttgctccagcataagatggttgaa
ctaaccaagagatacatggcttcacaaagatatttccccattgaatttgtggttggtttg
ttggagaaaatatcgtgcagtcggggatggattttaaactggggagtcacttgtttcctt
gaagcacgatattcactatcaaacttgttgaatgtttatgagaacgttcattcacaaaag
cttgactgctggtccaccctaggatctccacaccatctgctatatgtggtgaatgaactt
atcagtttgttcctggataacccaatgaagtatctcacacaccaccaacaaagacgtcca
ttccttaaccgttcattggatgcacttgctgttaacttagtggagttatgctcacttcct
aatcctgacgagcaggtgaagcaactcatagtgcgcatgcgcaagacgcaggccagtctg
gagaatatgcagcaaaggggtcggtag
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integrated database retrieval system
