Ciona intestinalis (yellow sea squirt): 100181952
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Entry
100181952 CDS
T01056
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03020
RNA polymerase
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100181952
09124 Replication and repair
03420 Nucleotide excision repair
100181952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100181952
03400 DNA repair and recombination proteins [BR:
cin03400
]
100181952
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100181952
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100181952
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100181952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
100181952
NCBI-ProteinID:
XP_002128916
Ensembl:
ENSCING00000006386
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MYDDDDLDLQAEEEEEISPEMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPIIELQAESQHTSTEVSVPTKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVVKHEAQPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFKKKDSKYAFTSEIRSSLENSSRPTSSMWVNML
ARGGQGVKKSAIGQRITAIIPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETK
KAYFLGYMVHRLLSAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQ
KFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLS
HLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPSAIANATKIFVNGCWVGIHRDPEQLMNTLRKLRRQMDIIVSE
VSMVRDIREREIRIYTDAGRICRPLLIVENQKLLLKTRHIDQLKEDYNSYSWQDLVASGV
VEYIDPLEEETIMLAMFPEDLQDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPR
NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVA
ISTYTGYNQEDSIIVNKSSVDRGFFRSVFYRSYKDAENKSAYDQEETFERPERSFCTGMR
HAIYDKLDDDGLVSPGIRVSGDDVVIGKTVMLPENEDELEGTTQRFKKRDVSTFLRTSET
GIVDQVMISINQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRAEDMPFTSEGV
QPDLIVNPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDTVNVQKISNLLHEYGYQ
QRGNEVLYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRD
GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAIANLRSHTFECRGCK
NKTHISQVRMPYACKLLFQELMSMSIAPRMMVT
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgatgatgacttggatttacaagctgaggaagaggaagaaatttcccccgag
atgtggcaggaggcttgctggattgttataagttcctactttgatgagaaaggtttggta
cgtcaacaactcgattctttcgatgaattcatccaaatgtcagtgcaacgtatcgtagaa
gatgctccaattattgaactacaagcagagtcccaacatacatcaacagaagtctcagtg
cctacaaaatatttgttgaagtttgaacaaatttatttatcgaaaccaacacattgggag
aaagatggagcgcctagtcctatgatgcctaatgaggcaagattgcgaaacctgacatac
tcagcaccattgtacgttgacatcacaaagacagtcgttaaacacgaagcacagccggtt
gaaacacaacatcagaaaacctttattggcaaaatccccatcatgttaagatcaacttat
tgcttgttaagtggactcactgatcgtgatttaactgagttgaatgaatgtccacttgat
ccaggaggttattttatcattaatggatcagaaaaggtgttgattgctcaagagaagatg
gccacaaacacagtctatgttttcaagaaaaaagattcaaaatatgctttcaccagtgag
attaggagttcacttgaaaatagttctcgaccaacaagttctatgtgggttaacatgttg
gctagaggcggccagggtgtaaagaagagtgccatcggacaacgcatcactgcaatcatc
ccgtacattcgacaagagattccgatcatcatcgtgtttcgagctcttggtttcgtatca
gatcgtgatatcttggagcatattatttatgattttgatgatccagaaatgatggaaatg
gttaaaccttcattggacgaagcgtttgtcatccaggagcaaaatgttgcgttgaatttt
attggtagcagaggtgcaaagcctggtgttacaaaggaaaagagaattaaatatgcgaga
gaaattctacagaaggagatgttgccacatgttggtatcagtgacttctgtgagacaaag
aaagcttattttcttggttacatggtgcatcgtctactgtcggctgctcttggaagaaga
gagctggatgacagggatcattatggaaacaagagattggatcttgcaggtcctcttctc
gcgtttctcttccgtggtttgttccgtaacttaatgaaagaagttcgactttatgcgcag
aagtttatcgaccgtggaaaggatttcaaccttgaacttgcaataaaaacccgaataatc
acggatggcttaaaatattcgctcgctactggtaactggggagatcagaagaaagctcac
caagcaagagctggagtttcgcaggtattgaaccggttaacttacgcatccacgttatcc
catctacgtcgattaaattcacccatcggacgtgacgggaaacttgcaaaaccgcgtcaa
ctacacaactcactgtgggggatgatatgtccggctgaaacacctgagggccacgctgtg
ggattagtgaagaaccttgcattaatggcttatatatctgttggttcacaaccaagtcct
atattggagtttcttgaggaatggtccatggaaaacttggaagaaatatctccttctgct
attgcaaatgccacgaagatatttgtgaatggatgttgggtaggcatccatagagatcct
gaacaactaatgaacacactacgaaagctacgaagacagatggatattattgtgtcagaa
gtttctatggttcgtgatattcgtgagcgtgagattcgtatttacacggacgccggtcgt
atttgccgacctttgcttattgtggaaaatcagaagctgcttcttaaaacgagacatatt
gatcaacttaaggaggattataatagttacagttggcaagacttagtagcaagtggtgta
gttgaatatattgacccacttgaagaagagacgatcatgttagcgatgtttcctgaagat
ttacaagataaaggtgaacaatactgtagcacgtacacacattgtgagattcaccctgcc
atgatacttggtgtgtgcgcttctattatcccgttccctgatcataaccagtccccaaga
aacacttaccagagtgctatgggcaagcaagccatgggagtttacatcaccaacttccat
gtacgtatggacacactcgcacacgtgctttactatccacaaaaacctctcgtaaccact
cgttcaatggaatatcttcggttccgtgaattaccagccggtatcaacgctatagtagcc
atctctacatatacaggatataatcaagaagattcaattattgtcaataaaagttcggtg
gatcgtgggtttttcagatctgtgttctaccgatcctacaaagatgctgaaaacaagagc
gcttacgatcaagaggaaacatttgaacggcctgagcgttcattctgcaccgggatgcga
cacgcgatatatgataagttggatgatgatggattggtatcgccaggtattcgtgtgtcc
ggagacgacgttgtgattggaaagacggtgatgttgccagagaacgaagacgagttggaa
ggaacgacccaaagatttaagaagagagatgtttcaactttcctcaggactagtgagact
ggaatcgtggatcaggtgatgataagcatcaaccaggatggttacaagtttacaaagata
cgagtacgatctgtaagagtcccacaaataggagataaatttgcaagtaggcacggacag
aaaggaacatgtggtatcacttacagagctgaggatatgccattcacgagcgagggtgtt
caacctgatcttatcgttaatcctcacgctatcccatctcgtatgaccattggccattta
attgaatgcatacagggcaaagtgtcagcaaataaaggagaaataggagatgccactcca
ttcaatgacactgttaatgtacagaagatatcaaacttattgcatgaatatggataccag
cagcgtggaaatgaggtgttgtacaacggacacacaggtcgcaaactcaacacccaagtt
ttcttcggtccaacttattatcagcggttaaaacatatggtggacgacaagattcattct
cgagcacgaggtcccgtgcaaatattgaaccgacaacccatggagggtagatcaagggac
ggtggtttgaggttcggggagatggaaagagattgtcaaatcgctcatggtgcagctcag
ttcttacgtgaaagattatttgaagcatctgacccgtatcgtgttcatgtttgtaacttg
tgtggacttatcgcaatcgctaatctaaggtctcacacctttgaatgcaggggttgtaag
aacaaaacacacatttcacaggtacggatgccatacgcttgcaaacttttgttccaagaa
ctcatgtcgatgtcaatcgctcctcgtatgatggtcacgtga
DBGET
integrated database retrieval system
