Ciona intestinalis (yellow sea squirt): 100182003
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Entry
100182003 CDS
T01056
Name
(RefSeq) ribosome maturation protein SBDS-like
KO
K14574
ribosome maturation protein SDO1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100182003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100182003
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
100182003
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBDS_N
SBDS_domain_II
SBDS_C
2-Hacid_dh_C
Phage_TAC_5
PrlF_antitoxin
Motif
Other DBs
NCBI-GeneID:
100182003
NCBI-ProteinID:
XP_018666760
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Position
3:complement(6227278..6228444)
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AA seq
250 aa
AA seq
DB search
MSIFTPTNQVRLTNVAIVRIKKTGKRFEIACYKNKVMSWRNNTEKDIDEVLQTHTVFVNV
SKGQTAKNQDLIKAFGTDNQTEVCKQILAKGELQVSEKERSVHLESMFRDIATIVTDMCV
NPDTKRPYTVTVIERAMKEDIHYSVNPTRNTKQQALQVIKLLKEKININRAEMRLRFFLP
GKDGKKIKEKLQPMLKTVESEEFSSALEMVCLVDPGSYRQIFDIVSKETRGKGKVEVMNL
KDIEESEEMF
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatatttacgccgacgaatcaagtacgtttaacaaacgtagctatcgttcgcatc
aaaaagacaggaaaacgctttgaaatcgcgtgttacaagaacaaggttatgtcgtggaga
aataacactgaaaaagacattgatgaagttctgcaaacccatactgtgtttgtaaatgta
tctaaagggcagactgctaagaaccaagatttaatcaaagcatttggtactgacaaccaa
acggaggtttgtaaacaaatattggcaaaaggtgagttacaggtttctgaaaaagagagg
tcggtgcatcttgaatcaatgtttcgagatatagctacaattgtgaccgatatgtgtgtg
aatcctgacactaaacggccgtacactgtaactgtaatcgaacgagcaatgaaagaagat
atacattactctgtaaaccctacccgaaacacaaaacagcaagcgttacaggttatcaaa
cttttgaaagagaaaatcaacatcaatagagcagagatgagacttagattctttctacca
gggaaagatgggaagaaaataaaagaaaaacttcaacctatgttaaaaactgttgaaagt
gaggaattttcttcagcacttgaaatggtttgcttggtggatcctggttcttatcgacag
atatttgatattgtaagtaaagagacgagaggaaaaggaaaggtggaagttatgaattta
aaagacatcgaagagagcgaagaaatgttttga
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