Ciona intestinalis (yellow sea squirt): 100182030
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Entry
100182030 CDS
T01056
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X2
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100182030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100182030
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100182030
mRNA degradation factors
3'-5' decay
Pan complex
100182030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
100182030
NCBI-ProteinID:
XP_018670410
LinkDB
All DBs
Position
14:complement(4468526..4478640)
Genome browser
AA seq
797 aa
AA seq
DB search
MAGFATNDSAMFDQINSALVGDLPSFGIAKESKFQQLMQRNSNSNPNPNRTMDDMNTYDT
SLSVEATAFQPTSASGMNSFSNIINSFESLDVSASQRSDNWNALGSVNPAAREFVPRNMS
APNLNHVQQNGGFNIPEFLPNRTTARINTQNGLQQPQQSPYTPQPPNNPYTQLPSIPGAH
GDVAPRMGGPHTSSSSMVEYLPGTHMPSPVPSHDPRLSVSSSVFTSPQNNSSTYYTGDSS
TPLTASSMGGFSTPGTSSPFPRQPMESLATSHATPERTSPLLTRRLANHRSSPAMGANMI
MDLPPTEDIAPPMAQENGGTTYFFTQNTTRPNLPVVMPPFHVFPGTPPNIEYMSLKANAP
SFFMANELRQAILQKHALTMLTVDTEQDPSVPAEVDNYHSLFPLEATPENPLQKSSTYGF
VTSCYKAIKYKDGLPYCLRRIHGFRQVNEKCMVLVEMWKKLQHANVVQLREVVTSKAFGE
HSLIFAHDYHAGAETMMSRHFQNPNNNYASKKWNGGTARQNAGLLPESLIWTYIVQLTSA
LRCIHTAGLACRVVDPTKIIITDKSRVRINGVGIFDVLGYDNSHSNPRAHMQQYQQEDMV
ALGKVVLALACNSVSSIQRDNFPKSIELVVMNYSNDLKNLIMYLLTPQQRPHNVNDIMPM
IGARFYTQLDAALLRCDVIENEMAKEVENGRLFRMLSKLGVINERPEFGMEATWSETGDR
YLLKLFRDHLFHQVTETGAPWVDMAHIVQCLNKLDAGVPEKLCLMSRDEQNVLVVSYAEL
KKAFEKCFQELTNASVA
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggcaggttttgcaacgaacgattctgcaatgtttgaccaaataaacagtgcattggtt
ggagatcttccatctttcgggattgccaaggaatccaagttccaacagttaatgcaacgt
aactccaactccaaccccaaccccaacagaactatggatgacatgaacacgtacgatact
tcattgtctgtggaggcgactgctttccaaccaacatcagcatcgggaatgaactcgttt
tccaacataatcaactcatttgaatcgttggatgtgtcagcttctcaaagaagtgataat
tggaatgcattaggaagcgtaaacccagctgcacgggagttcgtcccgcgtaacatgtcg
gctccaaacctcaaccatgtacaacagaacggtggctttaatattccagagttcctacct
aaccgaaccacagcgaggatcaacacacagaatggattgcaacagccacagcaatctcca
tacaccccccaacctccaaacaacccatacacacaactacccagcataccaggagctcat
ggtgatgtagcacctcgtatgggaggtcctcatacttcatcgtcatcaatggtggaatat
ttacctggcacccatatgccctcccctgtaccaagccatgaccctcgtttatccgtctca
tcttctgtcttcacctcaccacagaacaattcatctacttactacacaggggatagtagc
actccacttactgcaagctcaatgggagggttctcgacgcctggtacttcgtccccgttc
ccgcggcaaccgatggagtcgttagcaaccagccatgctacgcctgagcgcacatctcca
ctactaacaagaagattggccaatcacaggtcctcgccagctatgggtgcaaacatgata
atggatctccccccaacggaagacatagccccaccaatggcccaggagaacgggggaacc
acttatttcttcacacagaatacaacaaggccaaatttacctgtggtgatgcccccgttc
cacgtcttccccggcacgccacccaacatcgagtacatgtcacttaaagccaacgctccc
tcctttttcatggctaatgaattgagacaagccatcttacagaagcacgcgctcaccatg
ctaactgtggacacagagcaagacccaagtgttccagcggaagtcgacaactatcatagt
ttgtttccattagaagccacccctgagaatccactacagaagtcaagcacttatggtttt
gtaacttcatgttataaagctatcaagtacaaggatggtttgccctattgtttaaggagg
attcacggctttcggcaagtaaacgagaagtgcatggttcttgttgaaatgtggaagaaa
ctacaacatgctaacgttgttcaactgagggaggtggttacttccaaagcattcggtgaa
cattctttaatcttcgcgcacgattaccacgccggtgcagaaacaatgatgtcacgacat
ttccaaaaccccaacaataattatgcatcgaagaaatggaatggtggaactgcaagacag
aatgcaggccttctccccgaaagtttaatatggacgtacatagttcagctaacctctgcg
ttacgttgcatacacacagctggtctcgcttgtagagtggtggaccctaccaagatcatt
atcacggataaatcaagagttcgaataaatggagtcggaatatttgatgtacttggttac
gataactcacattccaatccacgcgctcatatgcaacaatatcaacaggaggacatggtg
gctctcggaaaggtggttctagcattggcttgcaactcagtgagttcgatacaaagagac
aactttcctaaatctattgaacttgttgtgatgaattattccaatgatttaaagaatctt
attatgtacctcctcactccacaacaacgcccacataatgtaaacgacataatgccaatg
attggtgcgaggttttacacccagcttgatgctgcgttgttgagatgcgacgttattgag
aatgaaatggccaaggaggtggaaaacggtcgtttgttccggatgttgtcgaagctcggc
gtgatcaacgagcgaccagagtttgggatggaggcgacttggtcagagacgggggatcgt
tatcttcttaaactcttccgtgatcatcttttccatcaagtcactgagacgggggctcca
tgggttgatatggcgcatattgtgcagtgtttgaataagcttgacgctggagttccggag
aaactttgcctcatgtcccgtgacgagcagaacgtgctcgttgtctcgtacgcagagctc
aaaaaagctttcgaaaaatgttttcaggaacttacaaacgccagcgttgcgtag
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