Ciona intestinalis (yellow sea squirt): 100182051
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Entry
100182051 CDS
T01056
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03440
Homologous recombination
cin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100182051
03450 Non-homologous end-joining
100182051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100182051
03400 DNA repair and recombination proteins [BR:
cin03400
]
100182051
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100182051
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100182051
BRCA1-C complex
100182051
NHEJ (non-homologous end-joining)
MRX complex
100182051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
Rad50_zn_hook
AAA_13
DUF1826
MscS_porin
bZIP_1
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
100182051
NCBI-ProteinID:
XP_026690000
LinkDB
All DBs
Position
1:5242497..5253048
Genome browser
AA seq
884 aa
AA seq
DB search
MKVELEEGNKHLKKNLMELKEKKARTTRDLNRLQSAADNGQLDVLQNQLQQAEDQLKKVE
RSNQVEEMKGTIIVKNKEMIVLQQQVKQLDADIYSMQKSSEIRTKLEMMKKQKKSKEDLI
DQLKRKCQRHLEELGLASHSSFPDKMKMMRWIRSKEEEVRSSRDHFDRKRSEFTEFSTKK
KMVSNQIKEKKKREEKLNETLYDVCGSDDLEQDLTQLDKEIKELQGSKGLADGIQYMYRE
FIKKLTNETDKSEAACPICMRCFEETSEVDELVEDLQTKLNMAPEKLASQKRQLTSKQAR
YKVLLDNKPIKMELDRLQTSDLPDLERTFTSVSSKISDAEKDLEEAEERWQKIKEEESTA
KRLLPDVSQIHSLQSDLEEIEEKIGMHETQLPLNSSTKTLDQMNMDKGNLSQAISKLNQE
IDDLRHMIETKTNFLHQMKEKVNNIQAEKLKLAADLQKCEQLQELQRTTESEIQNIRSKI
ELNERSIAPLVREVENLESKKKKVAISNNDKITKARDVLQTLQNKLKELERVNKNIDNFN
KSSVPTKLQRTSKEIEELESKIVDFENKMKKLRTDIARLQKEIATCTDRQRDLEDNSALR
ERNREIEDVRKKLLEMEEKLGGMNAAKLDSEVRQLTKEHSDLTKEKERCKVRQESLGENV
RSLQQELSRENFKFADKRYKDCLVSATTLELAIGDLDKYYKALDRAVMKYHQIKMDEINK
IIRELWQETYKGRDIEYIQICSSEDTGGSTAARRTFNYRVVMYCYSGTPMDMRGRCSAGQ
KVLASLVIRLALAETFCINCGILALDEPTTNLDRPNVLSLAEALLSIIQSRSQQRNFQLV
VITHDEEFVEIISRSNHVDHFFRVEKDDYGRSRITKCPIRSLNT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgaacttgaagaaggaaataaacatttgaagaagaatcttatggagttaaag
gagaagaaagctcggacaacacgagatttgaatcgacttcaatcggctgcagacaacggc
caactcgatgttcttcaaaatcaactacagcaagcggaagaccaactgaagaaagttgaa
aggtcgaaccaagtagaagaaatgaaaggaacaataattgttaagaataaagagatgatt
gttctacaacaacaagttaaacaacttgatgcagatatttattcaatgcaaaaatcctca
gaaatcagaacaaaattggaaatgatgaaaaagcagaagaaatcaaaagaagatcttatc
gaccaactgaagagaaagtgtcaacgtcatcttgaagagcttgggcttgcatctcattct
tctttccctgataaaatgaaaatgatgcgatggatcaggagtaaggaggaggaagtgaga
tcttctcgagatcattttgataggaagagatcagagtttactgagttttccaccaaaaag
aagatggtttcaaatcagattaaggaaaaaaagaaaagagaagaaaaattaaacgaaact
ttatatgatgtttgtggaagtgatgatttggaacaagatttaacgcaacttgataaagaa
atcaaagaattacaaggaagcaaaggtcttgccgatggtatccaatacatgtatcgtgaa
tttataaagaaactaacaaatgaaactgataagtcagaagcagcttgtccaatttgcatg
cgatgttttgaggaaacttcggaagttgacgaattagttgaagatcttcaaacaaaacta
aacatggctcctgaaaaattagcaagccagaaaagacaactcacaagcaagcaagcaaga
tataaagttctgcttgacaataaaccaatcaagatggagttggatcgattgcaaacttca
gatctcccggatttggaacgaactttcacgagtgtgtcatccaagattagcgatgcagag
aaagatttggaggaagcggaagaaagatggcagaagatcaaagaagaagaatcaacagca
aaacgtttgttgcccgatgtatcacagattcattcattgcaaagtgaccttgaagaaatc
gaggaaaagattggaatgcatgaaacgcaacttccacttaactcttcaaccaagacactc
gatcagatgaatatggacaaagggaatttatctcaagctataagcaaattaaaccaagaa
atagatgacctgcgtcacatgattgaaacaaaaactaattttcttcatcaaatgaaagaa
aaagtgaacaatattcaggctgagaaattaaagcttgcagcagatctacagaaatgtgag
caactgcaggagttacaacggaccacagaaagtgaaatacaaaacatcagaagtaaaata
gaactgaatgaaagaagcattgctccattagtaagagaagtggaaaatttggagagcaag
aaaaaaaaagttgcaatctctaataatgataaaattaccaaagcaagagatgttttacaa
actttgcaaaacaaacttaaagaattggaaagagtaaataagaatattgacaatttcaac
aaatcatcagtacctacaaagttacagagaacaagtaaagaaatagaagaacttgaaagt
aagatagttgattttgaaaataaaatgaagaaactacgaacagatattgctcgcttacag
aaggaaattgctacatgcacggatcgtcaacgagaccttgaggataattctgctcttcgt
gagcggaatcgtgagattgaagatgtgaggaagaagttgttggagatggaggaaaagttg
ggaggaatgaacgcagctaagttggatagtgaggttcggcagctcaccaaggagcattcc
gacctaactaaagagaaagagcgttgcaaagtaagacaggaatcgcttggtgagaatgtg
agatctctacaacaggaactcagcagggaaaacttcaaatttgccgacaaaaggtacaag
gattgccttgttagtgctactacactcgagttagcaattggggacttggacaaatattac
aaagcattggatcgagctgttatgaaatatcatcaaattaaaatggatgaaattaataaa
attatccgagagttgtggcaagagacatacaagggaagagatatcgagtacatacagatt
tgcagcagtgaggacacaggtggaagcacagctgctcgcagaacatttaattacagagtt
gtcatgtattgttatagtggtactcctatggatatgagaggcaggtgtagcgctggacaa
aaggttttagcttcattggtgattcgattggcattggccgaaactttttgtatcaattgt
ggaattcttgctttagatgaaccaaccactaatttagatcgaccgaatgttttgagcctg
gctgaagcactgctcagcatcatccaatctcgatctcagcaacgcaatttccagttggtc
gtgatcactcacgatgaggagtttgttgagatcatcagtcgatcaaatcacgtggatcat
ttcttccgcgtggagaaagatgattacgggagatctcgtataactaaatgtcccattcga
tcccttaacacataa
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