Ciona intestinalis (yellow sea squirt): 100182119
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Entry
100182119 CDS
T01056
Name
(RefSeq) laminin subunit alpha-2 isoform X1
KO
K05637
laminin, alpha 1/2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04512
ECM-receptor interaction
cin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100182119
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100182119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_G_3
Laminin_II
Laminin_I
Arc
Motif
Other DBs
NCBI-GeneID:
100182119
NCBI-ProteinID:
XP_026689688
LinkDB
All DBs
Position
1:complement(5824351..5868109)
Genome browser
AA seq
3269 aa
AA seq
DB search
MTLKDGAKKDVETKSITMMTSVERLLILPQTKQQDEELPDKTHHAPSGPSSCRRCSQCSK
MHLRLCGRQPSVARNSNLSLIAGHKDNFRDAFVLFKGENRLTLNPSSFVPTGLSLSVVRV
FGWILMLLCCLKTTYAQDNIVDLRYLTPEFTPTAGLFPSVVNLASHADITSNATCGETGP
VKYCKLVEHVDRRTNRGQQCRMCDAFSRNPTERHSVQHAIDGRGDRWWQSPTIDQGYQYH
RVTLTLDLRQVFQVAYVIVKAANSPRPGNWILEKSIDGVSWEPWQYFATSDRECLSQYGT
VASRLGSPNYKSDSEVMCTTYFSKLNPFENGEIHVSLINGRPSAENPSAELVEFTSARYI
RLRLQKIRTLHGDLMTLSFNRAENDPSVTRRYYYSIKDISVGGMCICYGHASTCPTNPRT
GLFRCACEHNTAGSNCERCAPGFQQHKWRPGNDGFQCEACNCHGHAEECYYDPDVDGRGE
SLDINGDYLGGGVCVGCRDGTDGVNCQSCVDGMYRPLDVEPNARNPCLPCSCDPFGGLRT
SDGTGPFTCVKDIDHMDAERDLFPGSCYCKEGYAGHICDRCAFGYTGYPICQPCQCNITG
SRNIDPCVGDCVCKEHVTGDRCDQCKLGFYNLQRENPMGCDTCYCNGATKNCESSNLKWS
TIQTNEGWEVRDRRGRRRAKPQFDLDLQEPYVEHGQTARELGSTMYYWSAPKEYLGNKLM
SYGGTLRYTVSYDILRGAQPLPIQEADVILDGNDRTLIYNHQGKLVEPETETEVVLKLAS
SVYGDQTGWVNAETLQPISKADMMSVLSDIQRILIRAVYSRNSGAVYRIYGVSMEIASTD
GDLSPANSVEICHCPPGYSGYSCQDCERGYWRNGKQCTLCDCNGHSTFCNQLNGACENCQ
HSTIGMHCERCKPGFYGNAINGTSHDCQRCLCPLAISSNNFSPTCRLDRVPGEMVCMECP
PGYSGKRCEMCSEGYFGNPSTLGGTCQLCNCNGNSRSCDTVTGVCKHCQGHTAGEHCERC
EAAYYGDAIVRKNCGPCECSPVGSVSRQCDAVTGQCPCRRDVYGRKCDACASNNYLSKEQ
RMCISCNCNPTGSIMMQCRADGSCVCRTGVVGKLCDSCSAGYHSFGDNGCRECNCPHTNG
NCDPVSGECRCPPNTEGEGCMHCVTGSYQWSVNNGCKLCNCSEVGSTALTCDNITGQCPC
KYENSGQTCNECRRGYYGYPSCKPCNCVVSGTQTDTCSNDGTCQCTDNGQCHCKINVEGK
HCDRCVEGAFGLSSENKVGCTTCFCSGVTNQCMQASYFWGNPIALSLAPVEVTNRITTGP
HFNGVTIPDDVDLLDSNVIMRKMNSEPYYWRLPPQFNGDKRLSYGGKLQYTIYYVSMLSV
PPGRRPKASVIIQGGVGEVKSIKYTMEDPQIGQTRSYVVPMQEFGWRGLDTNASVSREDF
AMILQNVESILIKASYGVLMDQSRLSEVYLDVAVPGVSGRGDSATDLPQAYGIEECVCPP
GYSGLSCQNCMAGYMRVQQGPNFGMCEPCNCFNRSNSCDIFTGRCLNCIDKFVGHNCEMC
IPGYYLSENSCHKCECPGDNALNNFSPTCHADGTDGITTYTCDACQIGYEGKHCERCADG
YFGDPTSPGGFCAKCGCSVAGSLDGVCDKLTGQCNCDEGIQGRICDRCSDKHVITPEGCQ
ECNDECAGKLLLEIEELANRTLKVDIRDMFPPPWNRLIVARNVTAQLQEKLENSSNYVMD
ALADMVKVPGNISETEMKVFPAVARAKSCVVDSNNASAKINATREEVKLQKTGMRNLYNT
VDGFTRMAARLLQGLQNGTAQDVTEIYGRVDMKMREMKSRNISRHQQLADTELEFANDML
KLIHANFTARANQSEPHARSMNNEIVEQVDQILLKLRDLQDKLNDAAADTRVAVTKNVLN
GQTLRQTLGHLERERNNAIMANVTLDEAQKVVDDTIKLYQSGLENMAELKAFPETTQADR
EELDRLGASLHEADLRQIMAKYVEIPAAHSRQLKNDAKSMLEVYNNVSAFSYNQTEAARR
WSNIVRSLEKANKTSSLAIKRAMSALATATRNLGIRANQSFLRSTDILNEVAELRNTVNG
ERDLLRSLDDHLRSSNHSSMNLTDQHNRLLARVNMINAAPPVSPDRVFEVTSASNRIVDL
LNTRLEKAQENVRLLGEAEHDVSQRSRITMEIADNPHTFDGLTEGMRAASIAEERTRNKL
EQVQLTSDSVRANISNIRQLIEEARRKAAAIRVSVKSEGKCAMEYKPIITPGKTTEIVLT
VQNNQPNNGLLYLARQRQDYIAVELRDYLPTVTWDLGGGPGFVQNSLKVKTDPEVATSSP
DWYKIIINRRNQQLNVTAYRESNKTATIRSVGGFSPGSYSMLDIDGDDMLFVGGISNDTE
VHNSVLYRKFEGCMGEAFLQGKSVGLWNFKRNVNPEGCTGCIESEIDAGREQTNLYSYSG
KSYSVLAANAHDPTQTQISIRLRTFSSEGLVVYTGSATNPDFYSIELKDGRIVLKIDLGN
GVHNATTENQYNTGEWVQVTFRRFNGNSLLLIRAINQSQENVWLRIPGSDEELNFTSDDV
MCVGGFPTDRTIKDYFGFQVRAGVTKVSFVGCLKEFTQNNLLRSLKSTVVEAVERDSGVL
TTCPNTVTRDIGISDGGYVELEPINLKPTDSISISFNTRNDAVLLLGTTENRKMRRRRQT
DEAFYSLYVLDGFVHCTVKQPGSPHISVVSKFNVYDDGAEHTATLHRNGANITLQMNEQG
DFVSEFLPRDTNQPIVVRRFFVGGVPDVFNSTQALGTGASLNGCVRAVISDLLVNFMRAL
KAKNSYFGTCAFVKFEPQPFLTVTSPTTITTADSMNPPKRSTTPKTEPNELSHQPPMVAA
QPNMTDSPFCRSVSGRMPVIRDSSAHFGLSRNSHVTFHLNKTISRKFTFDLKVRTLARNG
ILLYAGHKTQVDFFALKVKEGFPVFQFDNGRGRGEADSTVRINDGKWHRIRLKRSRRKGF
IAVDGVKTKTTSPKGANSMGVENTLYVGGLPESFNSNKIGQLSSMDACIKDLTLNRRRKL
NLAKPTSAFKVDKCYKKIEGGAFFNGKGYAVYSKKYRVGPSMLIELEFRTWAPNGILLAI
DNIRSDGLAIELVNGSIYFRADNGAGPFQAVYSDESTIRRSGRRTKFNLCDGRWHSLVAN
KDMNTLDLSVDGNVVTTVTSTATTNSADTKDPLYIGGLPDSGVRQNQLRTKENFQGCIRS
MKLKTTQVVHFDEVPETVGVYPNSCPKRK
NT seq
9810 nt
NT seq
+upstream
nt +downstream
nt
atgacgttaaaagatggcgccaaaaaggacgttgaaacgaaatcaattacaatgatgact
tcggtagaacgattattaattttgccgcaaacgaagcagcaagacgaggaattgcccgat
aaaacgcatcatgccccgagcggaccaagttcctgtcgcagatgctctcagtgttcaaag
atgcacttgcggctatgtggcaggcaaccgtctgtggcaaggaacagcaatttgtcactg
attgctggacacaaggacaatttcagagacgcgtttgtgcttttcaaaggcgaaaatagg
cttactttaaatccaagctccttcgttcctactggattatcgctatcagttgtccgtgta
tttggatggatccttatgttgctgtgctgtctgaagacgacatacgcccaggataacata
gtcgatttgcgttatcttactccagagttcactccgactgccgggctatttccgtcggtg
gttaacttggcgagccacgccgacattacgagcaatgcaacgtgcggagagactggacca
gttaaatattgtaagctggttgaacacgtggatagaagaacgaatcgaggtcaacagtgc
aggatgtgcgatgctttcagcagaaaccctactgaaaggcattcggttcagcatgcaatc
gatggcagaggagatcgatggtggcaaagccctactatcgaccaaggataccaatatcac
agagtcactctcactttagatttaagacaagttttccaagttgcatacgtaatagtgaaa
gctgcgaactcgcctcgacccggcaattggattctggaaaagtcgatcgacggcgtatcg
tgggaaccttggcaatattttgctacctcagatagagaatgtttatcgcagtacgggaca
gtcgcatctcgacttggatcgccaaactacaaatcagacagtgaagttatgtgcactaca
tacttctcaaagttaaacccgttcgaaaacggagagattcacgtttctttgattaacgga
aggccaagtgccgaaaatccatcagccgagctcgtcgaatttacatcggcacgatatatt
cgacttcgacttcagaagatccgaactctgcatggggatctgatgacgttgagttttaac
cgggcggaaaacgatccgtcggtgacgagacggtattactattcaatcaaagacatcagt
gttggtggaatgtgtatttgctacggacatgcgagcacttgtccaaccaatccacggaca
gggttattcaggtgtgcgtgtgagcacaacactgctgggtcgaactgcgagaggtgcgca
ccaggcttccagcagcataaatggaggcctggaaatgatggatttcagtgcgaagcgtgc
aattgccacgggcacgctgaggaatgctattatgatcctgacgttgatggcagaggagag
agtttggatattaatggagattatcttggtggaggagtctgtgttggatgcagggacgga
acggacggagtaaactgccagtcatgtgtggacggcatgtatcgtccgctggacgttgaa
ccgaatgcgagaaatccatgtctaccttgtagttgcgatccattcggtggtttaagaacg
tctgatggaacagggccgttcacttgcgtaaaagacattgatcatatggacgccgaaagg
gatttatttccaggatcttgttattgcaaggaggggtacgccggacacatatgcgatagg
tgtgcgtttggatacacgggttacccgatatgccagccatgccagtgtaatataacagga
agtcgtaacattgatccttgcgttggtgactgcgtgtgtaaggaacatgtaaccggagat
agatgcgatcaatgtaaattgggattctataatctgcaaagagaaaaccccatgggttgt
gacacgtgttactgtaatggtgcaacgaaaaactgtgaatcttcaaaccttaaatggtcc
accatacaaacgaacgaaggatgggaggtaagagatcggagaggaagaagacgagcaaaa
ccacaattcgatcttgaccttcaagaaccgtacgtggagcatggacaaactgcaagggag
ttaggatcaacgatgtattattggtcggctccaaaagagtatttgggcaataaactgatg
tcgtatggaggaacacttcgttacacagtgtcttatgatattttacgaggtgcccaacca
cttcctattcaagaagcagacgttatacttgatggcaacgatagaacattaatttacaat
caccaaggaaagctggttgaacctgaaactgaaactgaggttgttttgaagttggcatct
agtgtgtatggcgatcaaaccggctgggtgaatgcagaaactttgcaaccgatcagcaaa
gctgatatgatgtctgtgctaagtgatattcaacggatattaatcagagctgtgtacagc
agaaacagcggtgcagtgtacagaatatatggtgtttcaatggaaattgcttccacggat
ggcgatctttcaccagctaactcggtggaaatatgtcactgtccacctggctattctggc
tattcctgccaagattgtgaaagaggatattggagaaatggcaaacagtgtacactatgt
gactgtaatggacattccacgttttgtaatcaactcaatggagcctgcgagaactgccaa
cacagcactataggaatgcattgtgaacgttgcaagcctggattttatggaaatgcaata
aatgggacttcacacgactgtcaaagatgtctttgtccattggcaatatcaagcaacaac
tttagtccaacgtgtagacttgaccgagtgcctggagaaatggtttgcatggaatgtcct
ccgggatattctggaaaaagatgtgaaatgtgcagtgaaggatattttggaaacccatcc
actcttggaggaacatgccaactttgtaactgcaatggcaactctaggtcgtgtgataca
gtgactggtgtttgcaaacattgtcaaggccatactgctggtgaacactgtgaaagatgt
gaagcagcatactatggtgatgcaatcgttcgaaaaaactgtggaccttgtgagtgtagt
cctgttggttcagtgagtagacaatgtgatgctgtcactgggcaatgtccatgcaggcga
gatgtttatggaagaaaatgcgatgcatgtgctagcaataactacctgagcaaagaacag
aggatgtgtatttcatgcaactgcaatccaactggcagtataatgatgcaatgtcgagca
gatggttcatgtgtgtgcaggacaggagttgtagggaagttgtgtgattcatgctctgct
ggttatcacagctttggagacaatggttgccgagaatgcaactgtccacacacaaatggt
aattgtgatccagtttctggagagtgtaggtgtccaccaaacacagaaggggaagggtgt
atgcactgtgtaacaggatcttatcaatggtctgtcaataatggttgtaaactttgcaac
tgtagtgaggtgggttcaacagctcttacatgcgataatataactggacagtgcccatgc
aaatatgagaacagtggtcaaacttgtaatgagtgcaggaggggatattatggatatcca
agttgcaaaccatgtaactgtgttgtgagtggtacacaaactgacacgtgttccaatgat
gggacttgtcaatgtactgataatggacaatgtcattgcaagataaatgttgaggggaaa
cactgtgatcgttgcgttgaaggtgcatttggtttgtcaagtgaaaataaagttggttgt
acaacttgtttctgttcaggagtcacaaaccaatgcatgcaagcctcctatttctggggc
aatccgattgctttgagcttagctcctgttgaagttacgaatcgaattactacaggaccg
cactttaatggagtgactatccctgatgatgttgatttgcttgattctaacgtaatcatg
cggaaaatgaattctgaaccatattactggcgcctaccacctcaatttaatggagacaag
agactttcgtatggaggcaagttacaatataccatctactatgtatccatgttgtctgta
cctcccgggaggagaccaaaagcaagtgtgattattcaaggaggggttggtgaagttaag
agcataaaatacaccatggaagatccacagattggtcaaacacgttcatatgtagtgcca
atgcaagaatttgggtggagaggtcttgatacaaacgcaagtgtttcaagagaggatttt
gcaatgattttacaaaatgttgagtcaattctcatcaaagcatcatatggtgttctcatg
gaccaatcacggttaagtgaagtatatcttgatgttgctgtacctggtgttagtggaaga
ggagactctgcaactgatttacctcaagcttatggaattgaagagtgtgtctgtccacct
ggctattctggtctatcctgccagaactgtatggctgggtacatgagagtgcagcaagga
cctaactttggaatgtgcgagccgtgcaattgttttaacagaagcaactcttgtgatatt
ttcactggaagatgtttgaactgtattgacaaatttgttgggcacaactgtgagatgtgc
atcccaggttactatttatccgaaaactcttgtcataaatgtgaatgccccggagataat
gccctcaacaacttcagccccacctgtcatgcagatggaacagatggcatcactacttac
acatgcgatgcttgccaaattggatacgaaggaaagcattgtgaaagatgtgctgatggc
tattttggtgacccaacctcacctggaggtttctgtgccaagtgtggctgcagtgttgcc
ggatctttggatggtgtgtgtgacaaattgactggtcaatgcaactgtgatgaagggata
caaggtcgaatatgtgatcgctgcagtgacaaacatgtgatcactccagaaggatgccaa
gagtgtaatgatgagtgtgctggcaagctgttgttggaaattgaggagttggcaaaccgt
acactaaaagttgatattcgcgatatgtttccaccaccatggaaccgtttaattgttgca
cgaaatgtaacggctcaactgcaggaaaaacttgaaaactcttccaactatgtaatggat
gcattggcagatatggtgaaagttcctggaaatatcagcgaaactgaaatgaaagttttt
ccagcagtagcaagggctaaatcttgtgtggtggattccaataacgcttctgctaaaatt
aatgcaaccagagaagaagtgaaactgcagaaaacgggaatgagaaatttgtataacact
gtagatggtttcactcgcatggcagcacgcttgctgcaaggtttacagaatggtacagca
caagatgtcactgagatttacggcagagttgacatgaaaatgcgggaaatgaaatcgaga
aatataagtcgacatcaacagctggctgatactgaacttgagtttgccaatgatatgctg
aagcttattcacgccaacttcaccgcacgggcaaaccaaagtgagccacatgcacgcagc
atgaacaatgagatagttgaacaagtggatcaaattctactgaaactgagagatttacaa
gataaactgaacgatgcagcagcagataccagagtggctgtcactaagaatgtcctaaat
ggccaaactcttaggcaaactttgggacatcttgaaagggagagaaataatgcaatcatg
gccaacgttactttagacgaagcacagaaggtagtggatgatacaatcaagttgtatcaa
tctggcttggaaaacatggcggagctgaaggcgtttccggagaccacacaagctgacaga
gaggagttagataggttaggagcaagccttcacgaagctgatctacgacaaataatggca
aaatacgtcgaaattccagcagcacacagtcgtcagctgaagaatgatgctaagagcatg
ttagaggtatacaacaatgtaagtgcgttctcctacaaccagacggaagcagcgaggcgt
tggtcaaatattgtaagatctcttgaaaaggcgaacaaaacatccagccttgctataaag
agagccatgtccgcattagctaccgcaacaaggaaccttggaattcgagcaaaccaatca
tttttacgcagcactgatatattgaacgaagtggccgagctaaggaacacggtgaatggc
gaacgtgatttactgcgaagtttggacgaccatttgcgttcatccaaccacagttcaatg
aatcttacggatcaacataaccggttgcttgctcgtgtcaatatgattaacgcagcacca
cccgtcagtcctgatagagttttcgaggtgacaagtgcgtcgaatcgaatcgtggattta
cttaataccaggcttgaaaaagctcaagagaatgtgagattgttgggagaagccgaacat
gatgtttctcaacgatcaagaattacaatggaaattgctgacaatccacacacttttgat
ggtttgaccgagggcatgagggcggcttcgatagcggaagaacgaacaagaaacaaactg
gaacaagtacaactaacttcggacagtgtgagggcaaatataagtaacattcgccaactc
atagaagaggccagaagaaaagctgctgcaattcgtgtttctgtgaagtcggaaggaaaa
tgcgcaatggaatacaagccgattattacgccaggaaaaacaacagaaattgttctaacc
gtgcaaaataatcaaccaaataatggactcctttacctggcaaggcaaaggcaagattat
attgcggttgagttgcgagattaccttcctactgtaacatgggacttgggtggcggacct
ggctttgttcagaattcacttaaagttaaaaccgatcctgaggtcgcaacttcgtcgcct
gactggtacaagataataataaacagacgaaatcagcagttaaacgtcaccgcatacaga
gaatccaacaaaacagcaacaattagaagcgtgggtggattctcaccaggatcttattca
atgttggatatagatggcgacgacatgttgtttgttggaggcataagcaatgacactgag
gtccataatagtgtgctgtaccgcaagtttgagggatgcatgggtgaagcgtttctgcaa
ggcaagagcgttgggttatggaattttaaacggaatgtcaacccagaaggctgcaccggg
tgtattgaaagcgagattgatgcaggaagagaacaaacaaacttgtatagttattccggg
aaaagctactcggtgcttgcggccaatgctcatgatcctacccaaactcaaatcagcatt
cgactgcggacgttcagttcagaagggcttgttgtgtacactggttcggccacaaacccg
gatttttattctatcgagcttaaagatggtagaatcgtattgaaaatagatctgggtaac
ggggtgcacaatgcgacaacagagaaccaatacaacactggagagtgggtgcaagttacg
ttccgacgttttaacggaaattcccttcttttaataagagccatcaaccaaagtcaggag
aatgtttggctccgaataccagggtcggatgaagaattaaactttacgagtgatgacgtc
atgtgcgttggggggtttccgaccgacagaacgatcaaggactatttcgggttccaagtg
agagcgggcgttaccaaagtttcgtttgtcggttgtttgaaggagtttactcaaaataac
cttctgaggtcgctaaagagcacagttgtggaagccgtggaaagggattccggggtttta
acgacttgcccaaatacggttacacgagacattggtatatcagatggcggatatgtggaa
ctggaaccaattaacttgaaaccgactgattcaatctctattagtttcaatacaaggaac
gatgcggtgttgttacttggaacaaccgaaaatcgtaaaatgaggagacggcggcaaaca
gatgaggcgttttattcactgtatgtgctggatggtttcgtacattgtacagtaaagcaa
cctggaagtccccatattagcgtcgtttcgaaattcaacgtttacgacgacggcgctgaa
cacacggcaactttacataggaatggagcaaacattactttacaaatgaacgagcaaggt
gactttgtcagcgaatttcttccacgtgacaccaatcaaccaatcgtagtgcgacgattt
ttcgtcggcggggtccctgacgttttcaactcaacgcaggcgcttggcacgggtgcatca
ctgaacggttgcgtgcgagctgtcatatctgatctgttggtcaatttcatgagagcttta
aaagccaagaattcatattttggaacctgcgcgttcgtgaagtttgaacctcagcccttc
cttaccgtcacttctcccacaactattaccacagcagattctatgaatccacctaaaaga
tcgacaactccgaaaactgagcccaatgagctatcccaccaaccgccaatggtagcagcc
caacctaatatgaccgacagcccgttttgtagatctgtgtctggacgaatgccagttatt
cgagattcgtccgctcacttcggtttaagtcgaaacagtcatgttactttccaccttaac
aagactatctccagaaagttcacttttgatttgaaagttcgcacgcttgcacgcaacggc
atcttgctctacgctggccacaaaacgcaggtggatttctttgcgttgaaagtaaaagaa
ggttttccagtctttcagtttgataatggtcgcggcagaggtgaagcagacagcacagtt
cgaataaatgatggaaaatggcacaggattcgactgaaaagatcccgaagaaagggtttc
atcgctgtggacggggttaaaactaaaaccacatccccgaaaggagcaaacagtatgggt
gttgaaaatacactttacgtgggtggtttgcctgaaagtttcaactccaataaaattggc
cagttgtcaagcatggacgcttgtatcaaggatctgacgttaaacagaagacggaagctg
aaccttgcgaaacccacgtccgcattcaaagtcgacaagtgctataagaaaatagaaggc
ggagctttttttaacgggaaaggatacgctgtttatagcaagaaatacagagtcggtccc
agcatgttaattgaactggagttccgaacttgggctcctaatggcatcttactcgctatc
gacaacatacgatcagatggtctagcaatcgaacttgtaaacggatcgatttattttcgc
gctgacaacggagccggcccgtttcaagctgtatacagcgatgaatctacaatccgtaga
tccggtcgaagaactaagtttaatttatgcgacggtcgatggcattcattggtcgcgaac
aaagacatgaacacattagacctttcagttgatggtaatgttgtaacaacagttaccagc
acagctactactaactccgctgatacaaaagatccgttatatatcggtggattaccagat
agtggcgtaagacaaaatcagcttcgtacgaaagagaacttccagggttgcattcgaagt
atgaaattgaaaaccacacaagttgttcatttcgatgaagtcccggagactgtcggggtt
tatcccaactcatgccctaaacgaaaataa
DBGET
integrated database retrieval system
