Ciona intestinalis (yellow sea squirt): 100182155
Help
Entry
100182155 CDS
T01056
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100182155
09122 Translation
03013 Nucleocytoplasmic transport
100182155
03015 mRNA surveillance pathway
100182155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100182155
03041 Spliceosome [BR:
cin03041
]
100182155
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100182155
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100182155
Spliceosome [BR:
cin03041
]
Complex C
Other components
EJC/TREX
100182155
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100182155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
100182155
NCBI-ProteinID:
XP_026690617
LinkDB
All DBs
Position
1:complement(4726696..4730525)
Genome browser
AA seq
424 aa
AA seq
DB search
MTEAEELLDYDEEEHETTQEISTDKKDAKKDVKGTYVSIHSSGFRDFLLKPELLRAIVDC
GFEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTR
ELAFQISKEYERFSKYMPTIKVAVFFGGLPITKDQTTLKNNCPHIVVGTPGRLLALIRSK
SLTLKNVKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQVMMFSATLSKDIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQRCMAL
AQLLKEQNFPAIDIHRAMNQEERLSRYQLFKNFERRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVTELPDEIDISAY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagcagaagaattacttgactacgacgaagaagaacatgaaactactcaagaa
atctcaacagataaaaaagatgcaaaaaaagatgtcaagggaacatacgtctcaatacat
agctctggttttagagattttcttttgaaaccagagttattgagagctattgttgactgc
ggttttgagcatccttcagaagttcaaaatgaatgcattccgcaagctgtacttggtatg
gatgtgctctgtcaagctaaatctggtatggggaaaactgcagtgtttgtgctcgccaca
ttacaacaacttgaacctgtggatggccaggtatctgtgttggtaatgtgccatactcga
gaactggccttccaaatcagtaaagaatacgaacgtttctccaagtacatgcccaccatt
aaggtggctgtgtttttcggtggcttgccaatcaccaaagatcaaacaacgttgaagaac
aactgccctcatattgttgttggtacacctggtcgtctcttggcactcattcgctcaaaa
tcactcaccttaaaaaatgtcaaacattttattcttgacgagtgtgataaaatgttggaa
caattagatatgcgacgtgatgttcaagatatcttccgtcttactccccatgagaagcaa
gtgatgatgtttagtgccacgctcagcaaagatatccgaccagtgtgcaagaagttcatg
caagatccaatggaagtttatgttgatgatgaagcaaagctcaccttgcatggtcttcaa
caacattatgtcaagttgaaagacaatgaaaagaatagaaagttgtttgacctccttgat
gcattggagtttaatcaggtggtgatatttgtgaagtcagtgcagaggtgcatggctttg
gctcaattattaaaagaacaaaactttcctgcgattgatatacatcgtgcaatgaaccaa
gaagaaagactcagtagataccaactgtttaagaactttgaacgacgtattcttgttgct
acaaacctatttgggcgaggtatggatattgaaagagtgaacatcgttttcaactatgac
atgccagaggattctgatacttacctgcacagagttgcaagagctggtagatttggtaca
aaaggtctcgccatcacttttgtctccgatgaaacggatgcgaaaacattaaacgatgtt
caagatcgtttcgaggtcaatgtcaccgaacttcctgatgaaatcgatatttccgcctac
attgaggggagataa
DBGET
integrated database retrieval system
