Ciona intestinalis (yellow sea squirt): 100182193
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Entry
100182193 CDS
T01056
Name
(RefSeq) ras-related protein Rab-5B
KO
K07888
Ras-related protein Rab-5B
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04137
Mitophagy - animal
cin04144
Endocytosis
cin04145
Phagosome
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100182193
04145 Phagosome
100182193
04137 Mitophagy - animal
100182193
04148 Efferocytosis
100182193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100182193
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cin04147
]
100182193
04031 GTP-binding proteins [BR:
cin04031
]
100182193
Membrane trafficking [BR:
cin04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
100182193
Endosome - Lysosome transport
100182193
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100182193
Exosomal proteins of other body fluids (saliva and urine)
100182193
Exosomal proteins of colorectal cancer cells
100182193
Exosomal proteins of melanoma cells
100182193
GTP-binding proteins [BR:
cin04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
100182193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
MMR_HSR1
Gtr1_RagA
RsgA_GTPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
100182193
NCBI-ProteinID:
XP_002122313
Ensembl:
ENSCING00000003340
UniProt:
F6S1S7
LinkDB
All DBs
Position
Unknown
AA seq
217 aa
AA seq
DB search
MATRTGAPRPANSGTQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
QTVCLQDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFARAKTWVKELQ
RQASPNIVIALAGNKADLSNKRMVEHDDAVSYAEENGLLFMETSAKTAMHVNDIFLAIAE
KLPKNEAGASANRQSAGVGLTATDNREGSGKSCCGSN
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacgaactggagcacctcggccagcgaattcaggcacacaaggaaagatctgt
caattcaaacttgtattacttggtgaatctgcagttggtaaaagtagcttggtgttgaga
tttgttaaaggacaatttcatgaataccaagaatctacaataggagctgcattcctcaca
caaacggtatgcttgcaagataccacagtaaagttcgagatctgggatacggctggtcag
gaaagataccacagtcttgcacccatgtattacagaggtgcacaagctgccattgttgtt
tatgatattactaatcaggatacatttgctcgtgctaaaacttgggtgaaagaattacaa
agacaagccagtcccaatattgtgatagctctggcaggaaacaaagctgatttatccaac
aagagaatggtagaacacgatgatgctgtaagttacgctgaagagaatggacttttgttc
atggaaacttcagccaaaactgcaatgcatgttaatgatatatttttagcaattgctgag
aaattaccaaagaatgaagctggtgcttcagccaaccgacagtcagcaggtgttggttta
acagccactgacaacagagaaggttcgggaaaatcttgctgtggctccaattga
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