Ciona intestinalis (yellow sea squirt): 100182224
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Entry
100182224 CDS
T01056
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A-B-like isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
100182224
03400 DNA repair and recombination proteins [BR:
cin03400
]
100182224
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
100182224
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
100182224
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT
SCD
Adaptin_N
HEAT_2
HEAT_GCN1_C
Cnd1
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
100182224
NCBI-ProteinID:
XP_018670292
LinkDB
All DBs
Position
14:3925808..3948925
Genome browser
AA seq
1389 aa
AA seq
DB search
MDESQVAEILFPPGVKNVSSEMSPSELIKILKKCCKFFSQLEQDEEEMKREYLPFCHYIT
MGEFINETTDEHCRILIGCIIADVFRLHAPENPFQSEEKIKEIFSFMTEQLRHLEDTKGT
FFPKAFHILENVATIKSFNICIDMDDPNAALEIFSSLFKTLFSTVNSGHDKQVKSHMLDI
MAFAITDSSTVPATLLDIILENLVTAQRMNPSAYELACDLLRRTASAIEPSLTMFFQNMI
FEEQPERSRLSPHWMMLIPKLYKITPSLMTNTLPQLELKLGGPDPKVRLDVATMLSEMFS
NKDSDLVTQHPALWTSFLGRFRDIDPTLRCTCVKFYGKLLINHEAHFQYVKDAFEEFKRF
RNDTDESVRFAVVACIRGIVLKDIQLASNELLTFLKDKTKDKKWPVREAAIRAIGLIYKQ
YVTCEDASRIHCRRLQWIRDVVLQDYYTPHKDDWCLVEHVMVTCLVPYAVPDRRRMTLLF
ELYASIGRFSIQTFEEMLKKSRTLHLALRNIVAAFDLTNEEEKNRIIWSKIVFSAAQLTG
TPQATHQHLKKFFRHADQDVKIKQWLKYIVSDHYSCKKVAVALRDLLKKIEDDGLAKGAR
STAQQLLQRCSILPILVDQESLKILFELVKESLDGISIVDELNGGSAQAKAMDLLQHLSG
CSPQLFSSSECFVDLMGFIRRTDDEIVVHKALLILKNTGFIIEEKFPEIRSVLIPELKSK
AKSGPAQHAKHAVLTINQFTSVKESPLMQVFEYCKGIACTEGIGYSEMQTALTSIGCIAE
VIPAAFPGQLRYFIASVVVKQVIMKTGNKSDTASTKGRKKEQTWCEKVEISSESKAKIAG
MKCMVRWLRGLSSNDTEGCCGKTLRLLQHMLHNDGDLMKCGNISKADMSHLRLQAARCVL
KIAGIKEYRNILKPVVHQELAMLINDPVLEVRKIFLNKLYCAVFRLQISLSFLALFSFVS
QETVKVQREHGASLYNKIITRFRDLKKQAIMRNLMNPVMPEDMLPYLIYLMANDPDFVEG
ISRKSLARIKDCIHFILDPLLAKGHPESFGFVMRFAANVKRSRNAEEPDDVQRNENIYAV
CDLIIQHVLKRSGQLAVAILDPPESSIIRYIPSALYTTPTGPENDKVYLPREFYTSAKSV
PTLATTAAMGGDKYRRNLAHHGTSEIFGFGSDDQKKQAKKKYKSLEITGGDLVRKIPSPK
KPAVHDQSSSASASTASPMAKQSSSDLPTPPTSQSCSTQSSSSQGEGAKESLTPVRKSSR
IRKPTRHHSPSPPAKRGRSSIQSKPPRKKTSPTEDSMGDEASESESDSGENEATTLAWDE
SAASTSEPQSNSPVKRTSLARAKGSLLIASTSVKVPVRKTLGVNNNNITDSQSSDDSMGV
RRSNRRRGK
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagtcaggtggcggagattttattcccacctggtgtaaaaaatgtgtcgtcg
gagatgagtccgagtgaactgattaaaatattaaagaaatgctgtaagtttttttcccaa
ctcgagcaagatgaagaagaaatgaagcgcgaatatcttcctttctgtcattacatcaca
atgggtgaattcatcaatgaaacaacggacgaacattgcaggatcctcattggatgtatt
attgctgacgtgtttcgactacatgctcccgaaaatccttttcaatcggaagaaaaaatt
aaagaaatcttttcgtttatgacggaacagttgcgacatctagaagatacaaagggaaca
ttctttcccaaagcattccatattctagaaaatgttgcaacaataaaatcctttaatatc
tgtattgacatggatgatccaaatgcggcacttgagatattttcttcacttttcaaaaca
cttttcagcactgtcaactccggtcacgataaacaagtgaagagccacatgttggatatc
atggcatttgccatcactgatagctccacagtgccggcaacattacttgatattatacta
gagaacctcgtcacagctcagcgaatgaatccttcagcgtatgagcttgcatgtgattta
ttgcgcaggacagcttcagcaattgaaccaagtttgacgatgtttttccaaaacatgata
tttgaagaacaacccgaacgcagcagattatcaccacactggatgatgttgattccaaag
ctttacaaaattacaccatctttaatgaccaacacacttccacagcttgaacttaagcta
gggggtcctgatccgaaagtaagacttgatgttgctacaatgttgtcggagatgttttcc
aataaagattccgaccttgttacgcaacatccagcattatggacaagttttcttggaaga
tttcgcgacattgatccaactttgagatgcacctgcgtcaagttttatggaaaattgctg
ataaatcatgaagcccacttccagtatgtgaaggatgcatttgaggaattcaaacgattc
cgcaacgataccgatgaaagtgtacgctttgcagtggtggcttgcattcgtgggatcgtg
ttaaaggatatacaacttgcatcaaatgaactgctgacttttttaaaagacaaaacaaag
gataaaaagtggcctgtaagagaagctgccatacgtgcgataggactcatctataaacaa
tacgtaacttgcgaagatgcttcaaggatccattgtagaagacttcaatggattagagac
gttgtgttgcaggattattacacaccgcataaagatgactggtgtttggttgaacatgtg
atggttacttgtttggttccttatgctgttcctgatagaaggcgaatgacgttattgttc
gagctttatgcttcaattggccgtttttccattcaaacttttgaagaaatgctgaagaag
tcgcgtactttacatttagctttgcgaaacatcgttgctgcatttgatcttactaatgaa
gaagaaaaaaatcggataatttggtccaaaatcgttttctcagctgcccagttaactgga
acaccacaagccacccatcaacatttgaagaaattcttccggcatgcagaccaagatgtg
aaaatcaagcagtggttgaaatatattgtttctgaccattattcatgcaagaaggtagca
gtggcattgagagatttactgaaaaaaattgaagatgatggcttggcgaaaggtgcacgt
agcactgctcaacaattactacaacgttgttctatattgccaattcttgtggaccaagaa
tctctcaaaatattgtttgagttggtgaaggaatccttggatggaatatccattgttgat
gaactgaatggtggtagtgcacaagcaaaggccatggatctactacagcatctctcgggt
tgctcccctcaactcttctcatcctccgaatgcttcgttgatctgatgggtttcatccgt
cgcactgatgatgaaatcgtcgtccataaagctctcctgatcctcaagaacaccggattc
atcattgaggaaaaattccctgaaattcgctcagttcttatacctgagttgaaaagtaaa
gcaaagtctggccctgcacaacacgcaaaacacgcagtgttgaccatcaaccagtttact
tctgtgaaggaaagtccattgatgcaggtgtttgaatactgcaagggtattgcctgtacc
gaaggtataggttattcggagatgcaaactgccctgacatctatcggatgtattgcggaa
gttatacccgcggcatttcctggacaattgcgatactttattgcttctgtggttgttaaa
caggttataatgaagactggtaacaagagtgatactgcatcaacaaaggggagaaagaag
gaacaaacttggtgtgagaaagtggaaatatcaagtgaatctaaagctaagatagcaggt
atgaagtgtatggttcggtggttacgagggttgagctccaatgatactgagggctgttgt
ggtaaaacattaagattgttacaacatatgctgcataatgatggtgaccttatgaagtgc
gggaacatatcaaaggctgatatgtcccatcttcggctacaagctgccagatgtgtgtta
aagatagctggtataaaggaatacagaaacatacttaaacctgtcgtacaccaggaacta
gccatgcttatcaatgatcctgttttagaagttcggaaaatcttcttaaacaaattatac
tgcgcggtgtttcggctgcaaatcagtctttcttttcttgccctcttctcgtttgtatct
caggaaactgtgaaggtacaaagagaacatggagcgtcgctttataataaaattatcacc
agattccgggatttgaaaaaacaagcaataatgagaaatctaatgaacccggtgatgccg
gaagacatgttgccttacctcatatatctcatggctaatgatcctgactttgtggaagga
atatcgaggaaaagtctcgcaagaattaaagattgcatccacttcattcttgatcctctg
ctggccaaaggacatcctgagagcttcggattcgtgatgcgatttgccgccaatgtgaag
cgaagccgtaacgcagaggaacctgatgatgtacagagaaatgagaacatatacgctgtg
tgcgatcttattattcaacatgttcttaaaagatctggacaactggctgtggcaatattg
gaccctcctgaaagctccattatacgttatataccttctgcactttacacaacgccaacc
ggacctgaaaacgacaaagtttatcttcctcgagaattctacacaagcgccaagtcagtc
cccacccttgctactactgctgctatgggaggtgataaatacagaaggaaccttgctcac
catgggaccagcgaaatatttggttttggatctgacgatcagaaaaagcaggccaagaaa
aaatacaagtcacttgaaataacaggaggagatctagtcaggaaaataccgagccctaag
aaaccagccgtgcatgaccaatcaagttctgcttcagcgagcacagcttcacccatggcg
aaacagtcgtcatcagatttacccacacccccaacctcccaaagctgttccacacaaagc
tcatcttcacagggagagggagctaaagagagtctgacaccagtaaggaaatcctcaaga
ataagaaaacccactcggcatcattctccctcccctcctgccaagcgaggaagatcttcc
attcaatcaaaacctccacgtaaaaagacgtcacccactgaggacagcatgggggatgaa
gcttcagagtcggagtcagattcgggagaaaacgaagcaactacattagcctgggatgaa
tccgcagcatccaccagtgaacctcaaagtaattctcccgtgaaacgaacatctctggct
cgagcaaaaggaagtttgttgatcgcttccacttcagttaaagttcctgtaaggaaaaca
cttggagtgaacaacaacaacataactgattcacagtcatcagatgattccatgggtgtc
cgacgttctaacagaagaagaggaaagtag
DBGET
integrated database retrieval system
