Ciona intestinalis (yellow sea squirt): 100182246
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Entry
100182246 CDS
T01056
Name
(RefSeq) RNA polymerase I-specific transcription initiation factor RRN3
KO
K15216
RNA polymerase I-specific transcription initiation factor RRN3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100182246
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
100182246
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRN3
VIN3_C
Motif
Other DBs
NCBI-GeneID:
100182246
NCBI-ProteinID:
XP_026689606
Ensembl:
ENSCING00000012588
UniProt:
F6Y3X0
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All DBs
Position
3:6077554..6084020
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AA seq
588 aa
AA seq
DB search
MTSIRRVKSLGKIGESKTVRFGGKISDALEKLKQGDTSNYHLVLQQLRDPNIKSSQIMDW
FQEVTSLSHLLDQDQNEIVNALLKVRWMEREAEVVSTFRVFVVALVSANSVHLRRVIKSL
TQNLIPDSKSNATQSNHPKVTMEDIFEQIHIVFKEILRIIPRASEPMLAVFSQGFPFIRK
PNDSLIWYVKNLLFVTSYQPNMRSAILELVIKNLIDLDAVTHRHEIEMMENIEEIDDDEE
ISLFQMDEEMQENEEEIKMKHPLANKLDCAMHILFEYFYQVSYREGELQLQETRKLFREI
VHIFDTAIMPVHQLIHVQFVVFYICSLKQSFVESFIEHCWQKVVNPNMPTIVRQTYICYI
ASLLARATYIPLSTVTACIDLMVGWAHSYLREVTEFISPDVYHCDITRHGTFYSICQATF
YVIIFKHEDILKSKLGHKYFHTLNLQHLIVSPLNPLKACLSSVVSLFTSTMRQHQLVYCD
TIVERNNRQMLPVVGMATLSVKNPLGSFFPFDPYLLKRSSTFIHPIYKVWEGRSPHCEDE
DNDDPNKENIEDQGLFDEDDSGIKGSFSNQVPPSPLSPGFQHVTPSPY
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacttccataagaagggttaaatccctgggcaagattggcgaaagcaaaactgtccga
tttggagggaaaatttctgatgcattagaaaagttaaagcagggtgataccagcaactat
catcttgttcttcagcaactacgggatccaaacataaagtcaagccagataatggattgg
tttcaagaggttacttcattgtctcatcttttagaccaagatcaaaatgaaattgtcaat
gctctgttaaaagtacgttggatggaacgagaagcagaggtagtttcaacattccgtgtg
tttgttgtcgctcttgtttctgcaaattctgttcatttaagaagagttatcaagtcactg
acccaaaatctaattccagattcaaaatccaatgccacacaaagcaaccaccccaaagta
acaatggaggacatttttgagcaaattcacattgtctttaaagaaatactgcgtatcatt
ccaagggcatcagaaccaatgctagcagtgtttagtcaaggcttccctttcattcgtaaa
ccaaatgattccttgatctggtacgtcaaaaacctcctgttcgtcacatcttaccagcct
aacatgagatctgcaatacttgaactggtgataaaaaatctcattgatttggatgctgtc
actcatagacacgagatagaaatgatggaaaacattgaagaaatagacgatgacgaagaa
attagtttgtttcaaatggacgaagagatgcaagaaaatgaagaagagataaaaatgaaa
catccacttgccaataaattggattgcgcaatgcatattttgtttgaatatttttaccaa
gtttcatacagggaaggggaactacagttgcaagaaacccgaaaactttttcgtgaaatt
gttcatatatttgacacggcaataatgccggtacaccaacttatccatgtacagtttgtg
gtgttttacatctgcagcttaaaacagagttttgttgaatcgttcatcgaacattgttgg
cagaaagttgtgaatcctaacatgccaacaatcgtacgacaaacctacatttgttacatt
gccagcttattagcacgtgccacctatataccattatcaacggtgacagcatgtattgac
ttgatggttggttgggcacacagttacttgagagaggtcaccgagttcatctcaccagat
gtatatcattgtgatataaccaggcatgggacgttctacagcatatgccaagcgacattc
tatgtcattatctttaaacatgaagacattttgaaatcaaaactaggtcataaatatttc
cacaccttgaacttgcaacatctcatagttagtccacttaatcctttaaaagcttgttta
tcatctgtggtcagtttgttcacctctacaatgaggcagcaccaacttgtgtattgtgac
acaatagtggaaagaaacaatcgacaaatgttaccagttgttggcatggcaactttatct
gtaaaaaatcctcttggttcattttttccttttgacccttatctgttaaaaaggtcttct
actttcatccacccgatatacaaagtgtgggaggggaggtcgcctcattgtgaagatgaa
gacaatgacgatccaaataaagaaaatattgaagatcaggggttatttgatgaagatgat
agtggcatcaagggatcattttcgaatcaagttcccccttctccattatcacctggtttt
caacatgttactccatctccttactaa
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