Ciona intestinalis (yellow sea squirt): 100182320
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Entry
100182320 CDS
T01056
Name
(RefSeq) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100182320
Enzymes [BR:
cin01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
100182320
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
100182320
Prokaryotic type
100182320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
100182320
NCBI-ProteinID:
XP_002128771
LinkDB
All DBs
Position
7:complement(5297162..5303801)
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AA seq
531 aa
AA seq
DB search
MLRSALRILLRRYRFTSIQKPNQLSTTSITQLPHLTMDAANIAKIDDGIDIKNSEGSEAN
SGLVSGPKRKVAMLFAYCGANYHGLQMNRGERWIKTIEGDLFQALVDAKVVPSNCVQEPH
KMTYKSASRTDKGVSTCGQVASLKLRLNENVVGLINQHLPEDIVVMAVRRTTQGFNAQLK
AEGRTYSYTLPTFAFADYGTGNTSYKITEDKLLKVKSILYRYKGTHSFHNFTSGKRMGEM
SAQRFIIEFEHGDPFLVQNVEFITLTIKGQSFMLHQIRKMIGLLIAMVNGLAKEQHFIRA
FSEPLEDIPKAPGTGLVLEKVHYDGFNKGPAKQHGGVDFTDVQDKIDEFRKTRIFPYIYK
KEIEESSMLDWLETLSRHDYSGKSSKEQWEYQVKEWSKKKLENETKTEDATESVKVKSLV
PPNDCKSTECLPLDGSKEESSLNKETNDTSESKKSEKVVSLTPPNDCKSTECLPLDGSKE
DLSLDKETPGHDVTNGLKNEDCSVNKKLNEVMNGAIVTSEPVAKKQKTSMT
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgctacgatctgctctacgaattttattgcggcgttacagattcaccagtatacagaag
ccaaaccaactgtcaacaacctctattacacaactcccacacttaaccatggatgccgcg
aacatagctaaaattgacgatggaattgacattaagaactccgagggcagtgaagcaaac
tctggtcttgtgtctggaccaaagagaaaagttgctatgttgttcgcatactgtggagca
aactaccacggtcttcaaatgaacagaggggaaagatggatcaaaactatagaaggagat
ttatttcaagctcttgttgacgctaaagttgttccttctaattgtgtgcaagaacctcac
aagatgacgtataaaagcgcatcaaggacagataagggagtttctacatgtggacaagtt
gcttcactcaagttaagattgaacgaaaatgtagttggtttgatcaaccaacatctgcca
gaagatattgttgttatggctgtgcgccgcacaacccaggggttcaatgcccaacttaaa
gcagagggccgtacatattcatacactctccctacttttgcattcgctgattatgggacg
ggaaacacttcgtataaaataacggaagacaaacttctgaaagtaaagtcaatcttgtat
cgatacaaagggacccattccttccacaactttacctcaggaaaacgcatgggtgaaatg
agcgctcaaaggtttatcattgagtttgaacatggggacccattcttggtgcaaaatgtg
gaatttattacattgactataaagggtcaaagcttcatgcttcatcaaatcagaaagatg
atcgggttactaatagcaatggtgaatggattggccaaagaacaacattttattcgagcg
ttttctgaaccccttgaagacatacctaaagctcctggaacgggtcttgtattggagaaa
gtccattacgatggcttcaacaaaggcccagcgaagcaacatggtggggtcgacttcact
gatgtccaagacaagattgatgagttcagaaaaacgaggatatttccctatatttataag
aaagaaattgaagagtcgtccatgttggactggttggaaactttgtcacgtcatgattac
tcggggaaatcttccaaggaacaatgggagtatcaagttaaagaatggagtaaaaagaaa
ttggaaaatgaaacaaaaaccgaagacgcaactgaatctgtgaaagttaaatcactagtg
ccacctaatgactgtaaatctactgaatgccttcccttagatggcagtaaagaggaatcg
agtttgaataaagaaaccaatgacacatctgaatcaaaaaaatctgaaaaagttgtatca
ctaacgccacctaatgactgtaaatctactgaatgccttcccttagatggcagtaaagag
gatttaagtttggataaagaaactcctggtcatgatgtcacaaacggtttgaaaaatgaa
gactgttctgttaacaagaaacttaatgaggtcatgaatggggcaattgtgacatcagaa
ccagtagcgaaaaaacaaaagacttctatgacatag
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