Ciona intestinalis (yellow sea squirt): 100182343
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Entry
100182343 CDS
T01056
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100182343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100182343
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
100182343
Prokaryotic type
Archaeal type
TFB
100182343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
BRF2-like_C_cyclin_rpt
RB_B
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
100182343
NCBI-ProteinID:
XP_026691619
Ensembl:
ENSCING00000009619
LinkDB
All DBs
Position
9:complement(5518218..5521883)
Genome browser
AA seq
314 aa
AA seq
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MAGRNYLHQIHCPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKD
MSRVGDSQNPLLSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLIHAFREIS
SMADRISLPKNIVDRSNKLFKQVYDSKSLRGRANDAISAACLYIACRQEGVPRTFKEICA
ISRISKKEIGRSFKLIVKNLETNVEVITSGDFMSRFCSNLNLPPYVQRGATYIARKAVEK
DLVAGRSPISVAAAAIYMASQASKEKRSQKEISEIAGVAEVTIRQSYKLMHPRAKDLFPE
DFNFHIPVSQLPTF
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggctggacggaactaccttcaccagatccactgccctcagcatccagacgcagctctg
gttgaagattatcgcgctggcgatatgatttgtcctgaatgtgggctcgtggttggagac
aggacaattgatgttggatcagaatggagaacattttcaaatgacaaagattcaaaagat
atgtctcgtgttggagattcacaaaacccattattgtctggaagtgatttatccacaatt
attgagcgaccatctggaccaccaggttcttctaatgataatggtttctcccagttttct
aatcgtaaaacaatgaacaacagcgatcgtgtcctgatccatgcttttcgggaaatatca
tcaatggctgatagaataagtctgccaaaaaatattgtggatcgttcaaacaaactgttc
aagcaagtgtatgattctaaaagtttaagaggtcgagcaaatgacgcaatctctgctgca
tgtttgtacatcgcgtgtagacaagaaggggtaccacgaacctttaaagagatttgtgct
atttcacgaatctcaaaaaaagaaatcggaagatcttttaagctaattgtaaaaaatctg
gagacaaatgtggaagttataacatctggagactttatgtcgcgtttctgttccaacttg
aatctgccgccttacgtgcaaagaggagccacatacattgctaggaaagctgtagagaaa
gatctggtggcaggtagaagtccaatatcagttgctgctgctgctatctacatggcttca
caggcgtccaaggaaaaacgatcacagaaagagatcagtgaaatagcaggagtagcagaa
gtgacaatacgtcagtcgtataaactgatgcatcctcgggccaaagatctctttccagaa
gatttcaattttcatattccagtctcacaacttcctaccttttaa
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