Ciona intestinalis (yellow sea squirt): 100182517
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Entry
100182517 CDS
T01056
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04140
Autophagy - animal
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100182517
04148 Efferocytosis
100182517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100182517
Membrane trafficking [BR:
cin04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100182517
Hops complex
100182517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_PEP5_VPS11
PEP5_VPS11_N
VPS11_N
VPS11_C
Clathrin
zf-rbx1
zf-C3HC4_2
zf-RING_2
Beta-prop_EML_2
zf-ANAPC11
zf-C3HC4
TPR_GEMI5
zf-RING_5
zf-C3H2C3
KIF21A
WDR55
TPR_11
Peptidase_C33
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
100182517
NCBI-ProteinID:
XP_009860840
LinkDB
All DBs
Position
14:3158326..3172438
Genome browser
AA seq
942 aa
AA seq
DB search
MAFTQWRRFTFFNKQAVPTNVAGRSWDTVRDAEMACSTCGRGVLIFGDSNGFVHMVNHNF
QVSTFKAFAITVLHLFQLKQHNMLAAVGIDEDGVNPVIKVWNMDKKDKFGNPFCCRIQRT
IPASNTPSMVTSFCVHENQSFMAVGFAIGSIALYKGDIAKDRTLNRTVHLMNENEGQITG
LSFQGTGKACHLFATTENLVVSFNLQEKLPKKNVLDRRGCSLFCSTMSDMVMDNHFIVTA
SDAVYAYQADSRGPCFAFDGEKLMAKWFNGYLVLVYKDKAKNSIPSSSSMKIPDKNIVTI
YDASQKLIAYSSPLPGVQEVLYEWGSLFALVADNNLICLQEIDIQQKLEMLFKKNLYSLA
VNLAKSQDLGKDGLVDIFTQYGDHLYSKGDFDGAIAQYIKTIGHLEPSYIIRKFLDAQQI
RNLTSYLQAMHELGRANEDHTTLLLNCFTKLKDVENLNKFIMTPETELHFDVETAIRVCR
QAGYYKHALQLAEKHHKHKWYLKIQLEDTHQYRRALSYIRQLPFKEAENSLKRYGKTLVN
NTPEETTELLKSLCTDYQPSNHPDLGHQSGNVSKSNGVEFIHIFVNSPNMLVKFLEHLIK
VQDKAPETVYNTLLELYLQKMNDPAETKSKSDQEKLTLNLLKEISLKKYDTDQALLLCQM
SNFRPGILFLYEACELYQQILRYHMDHESHGLVVETCRSYGEKDPTLWQQALTYFARQRD
VDCRQHITQVLAHIEKHNLVPPLLVIQMLSKNSTVTLGVVRDYILRRVRQESEEIEKCEK
SISEYQEQTEDMKKHIEQMKTSATIFQETKCAACSYELELPAVHFLCQHAFHMHCFESYA
DSDTECPVCSPKNRKILESLREQEQTLASSMALHEQFNNQLKRSTDGFSVIADFFSKGVF
NKITLVTDSDSSSKGASGGPGSHGIDPTLQKELLMMQQANRR
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcttttacacagtggcgacgttttacgttctttaacaagcaagcagtgcccactaac
gtggctggacgatcatgggacactgtacgagatgcagagatggcgtgttctacttgtggc
agaggagttctgattttcggagatagcaatggttttgttcacatggtgaaccataatttc
caagtttccactttcaaagcatttgccatcactgttctacacctcttccaattaaaacaa
cacaatatgctcgcagcagttgggattgatgaggatggtgtgaatccagtgataaaagtt
tggaatatggataagaaggataagtttggaaacccattttgttgcagaattcaacgtact
ataccagccagtaatacaccaagcatggtgacttcattttgtgttcatgaaaaccaaagt
ttcatggctgttggattcgctattggatctattgctttatataaaggagatattgctaag
gatagaaccctgaaccggactgtccatttaatgaatgaaaacgaaggacaaataacaggt
cttagttttcaaggcactgggaaagcatgtcatctgtttgcaacaacagaaaacttagtt
gtttcgtttaacttgcaagaaaagctgccaaagaagaacgtgcttgaccgtagaggatgc
tctttattctgcagcactatgtccgacatggtaatggacaatcactttatagtcacagct
tctgatgcagtgtatgcttatcaagctgattcaagaggcccatgctttgcttttgatggt
gaaaaattaatggcaaagtggtttaatggataccttgttcttgtttataaagataaggcc
aagaactccattccttcttccagttctatgaaaataccggacaagaatattgttacaata
tatgatgcaagtcaaaaacttattgcatattcttcgccactacctggtgtacaagaggtg
ttatatgaatggggatcattatttgcacttgttgctgataataacttgatttgtctgcaa
gaaatcgacatacagcagaaactagagatgctgtttaagaaaaacctctattccctggct
gttaacttggctaagagccaggatttaggaaaagatggtttggttgatatctttacacag
tacggtgatcatttgtacagcaagggtgactttgatggtgctatagctcaatatattaaa
accattggccacctggaaccatcatatattattaggaagtttctggatgctcaacaaatt
cgtaatcttacatcatacctgcaagcaatgcatgagttgggacgagccaatgaagaccac
accacactgctgttgaactgtttcaccaagctaaaggatgtagaaaatctcaacaagttt
atcatgactccagagacagaacttcactttgatgttgaaactgcaatccgtgtttgtaga
caagctggttattataaacatgctttacaactggctgagaaacatcataaacacaagtgg
tatttgaaaatccaattggaagatactcaccaatatagacgtgcattgtcatatatacgg
caactgcctttcaaagaggcggagaacagtttaaaaagatatgggaaaactctggtgaac
aacacccctgaagaaacaactgagctgctgaaatctttatgtacagactatcagccttct
aaccacccagatcttggtcatcaaagtggaaatgtttcaaaatcaaatggagtcgaattc
attcatatattcgtgaacagtcctaatatgcttgttaaattccttgagcatttaataaag
gtacaggacaaagcaccagaaacagtttacaatactttgttagaactctaccttcaaaag
atgaatgatccagctgaaactaagagtaaatctgaccaagaaaagctcacactgaatcta
ctaaaggaaatatcgttgaaaaaatatgatacagaccaagctttactactttgtcaaatg
agtaactttaggcctggtatcttgttcttgtatgaggcctgtgaactgtaccaacagatc
ctacgttatcatatggaccatgaatcccatggtttagttgttgagacttgtaggtcttat
ggagagaaagacccaacattgtggcaacaagcacttacatattttgctagacaaagagat
gtggattgcagacagcacatcacacaagtcctagctcatattgaaaagcataatctggtt
ccaccattactggttattcagatgctttcaaagaattctacagttactttgggagttgtt
agggattatatattaagaagggttcgacaggaaagtgaagaaattgaaaaatgtgaaaaa
tcaatttctgaatatcaagaacaaaccgaagatatgaaaaaacacattgaacaaatgaaa
acaagtgccacaatatttcaagaaacaaagtgtgcagcatgctcttatgaacttgaatta
cccgctgtacattttctctgccagcatgcctttcatatgcattgctttgaaagctatgct
gacagtgacacagaatgtcctgtgtgttctccaaaaaatcgaaagatcttggaaagttta
cgagaacaagaacagactcttgcaagtagtatggcattgcatgagcaattcaacaatcaa
ctgaaacgttctacagatggtttctctgtaattgcagacttcttttccaaaggagttttt
aacaagattactttggtaactgacagcgactcaagctcaaagggagcatctggtggccct
ggatcccatggtattgatccaacattacagaaagagttgttaatgatgcagcaagcaaac
cgcagataa
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