Ciona intestinalis (yellow sea squirt): 100182540
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Entry
100182540 CDS
T01056
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100182540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100182540
03041 Spliceosome [BR:
cin03041
]
100182540
03009 Ribosome biogenesis [BR:
cin03009
]
100182540
03016 Transfer RNA biogenesis [BR:
cin03016
]
100182540
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100182540
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100182540
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100182540
Complex C
U4/U6.U5 tri-SnRNP related factors
100182540
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Helicases
100182540
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100182540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
DUF3379
Ebp1_C
Helicase_dom4_arc
DBC1
Motif
Other DBs
NCBI-GeneID:
100182540
NCBI-ProteinID:
XP_002131169
Ensembl:
ENSCING00000003239
LinkDB
All DBs
Position
5:complement(3232234..3241395)
Genome browser
AA seq
1037 aa
AA seq
DB search
MAGFGDEIFNVFDEESDEKSKSPRKSTAKRPKISDDSEKLPEKKQKCEEEEDETKIRDET
EKLSELPPPPKDEVEDFSSLLEALPKVETKSMESLITGCTHEVAFQSGSDVPRLLPKAAE
PAKEYKFILDPFQQEALLCLDNNQSVLVSAHTSAGKTVVAEYAIAMCLRDKQRVIYTTPI
KALSNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVF
DEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQFASWICHLHKQPCHVVYTDY
RPVPLQHYIFPAGGDGLHLVVDDNGDFREDNFNTAMAVLRDAGDNAKSDFNRRGKQGGQR
GKSGCIQIVELIMERKFLPAIVFSFSKKECEFYANQVQKLKFNSTEERKLVQEVFDNAMD
SLSEEDRRLPQVEACLPFVLNGIGIHHGGLLPIIKETIEILFSEGLIKVLFATETFSMGV
NMPAHTVVFTSIRKFDGKDFRWITGGEYIQMSGRAGRRGMDENGLVIMMVDEKLSPSVGK
ALVKGSPDPLDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMLENVSKLE
TEYSEMKIKNEEESMTYYRIRQQLNKLASQLEEFVHLPKFCLPFLQPGRLVKVRNGEHEF
GWGVVVNFQKKQPKSSGPMRGGDEPQPEYVVDVLLNCDKEGLHSVAVRLPRPAKDSLKSE
MAVVPIMLPLIKALSSVRLFLPKDLRPLDNRQSLLRALEEVKKRFPDGIPLLDPVEDMSI
KDDRLKSIVKKTEAFERRMYKHPLHTRSDVTQVYQLCENKTKLANKVKEAKRALKKARTI
LQMDELKCRKRVLRRLGYATMSDVIETKGRVACEISAADELLLTELIFNGVFNNLTPAQC
AALLCCFVFDEKSKSIPKLSEELATPLRQLHETARKIAKVSNESKLVLDEEEYVQKFKTM
LMDVVHSWCNGSSFAKIAEMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKFSE
GIQLIKRDIIFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatttggtgatgaaatattcaacgtatttgacgaagaaagtgacgagaagtca
aaatcaccaagaaaatcaactgcaaagaggcccaaaatatctgatgactctgaaaaactt
cccgaaaagaagcaaaaatgtgaagaggaagaagatgagactaaaatccgcgatgaaaca
gagaaattgagtgaactaccgcctccaccaaaagacgaagtagaagacttttccagcctt
ttggaagcattgccaaaagttgaaacgaaatctatggagtcgttaatcactggatgcaca
catgaagttgcgtttcaatctggatcagatgtccctcgcttgctaccaaaagctgcagag
ccagccaaagagtataagtttattctggatcctttccaacaagaggctttattgtgtctt
gataacaatcagtctgttcttgtatctgctcatacctctgctgggaaaacagtagtagct
gaatatgccattgcaatgtgcctacgtgacaagcaacgtgttatatatacaactccaatc
aaagctcttagtaatcaaaagtacagagacctctatgaggaattttcagatgttggtttg
atgaccggggatgttaccattaatccaacagcatcttgccttgttatgaccacggagatt
ttgcggagtatgttataccgtggatcagaagttatgcgggaggttgcgtgggtggtattt
gacgagatccattatatgaggaacaaggaaagaggagtagtttgggaggagactatcatc
ctcctcccagataatgttcgttatgttttcctctctgccacgattccgaacgctcggcag
ttcgcatcatggatttgtcaccttcataaacagccgtgccatgtggtgtatactgactac
cgaccggtgccacttcaacattacatcttccctgctgggggggacggacttcatctggtt
gtggatgataatggtgactttcgagaggataatttcaacacagcaatggcggtgttacgt
gacgcaggagataatgctaaaagtgattttaacagacgaggaaagcagggtggacaacgt
ggcaagagcggttgtattcaaatagttgaacttatcatggaaagaaaatttcttccagca
attgttttttcattcagtaaaaaggaatgtgaattctatgcaaaccaagtacaaaaactc
aagttcaattcaactgaggagcgaaaattagttcaagaagttttcgacaacgcaatggac
tcactttcggaggaagatcgccggctccctcaagtggaggcttgtttaccgttcgtgttg
aacggaatcggaatccatcatggtggacttcttcctattattaaggaaacaattgagatt
ctgttttcagaaggattaataaaggttctatttgccactgaaacattttcaatgggtgtt
aacatgccagctcacactgttgtttttacaagtatacggaagtttgatggcaaagacttc
agatggattactggtggggagtatatacagatgagtggaagagcggggaggagaggaatg
gatgagaacggcctcgtaatcatgatggttgatgaaaaattatcccccagtgttgggaag
gcattagtaaagggttcccctgacccacttgattcagccttccgtctaacatataatatg
gttcttaacttgctccgtgtggaagaaatcaacccagaatatatgctggaaaaatctttc
tatcaattccaacactacactgcaatacctgagatgttggaaaatgtgtccaagttagaa
acagaatattctgaaatgaagatcaaaaatgaagaagagtcgatgacatattaccgcatt
cggcagcaactaaacaaactcgcatcacaactggaggagtttgttcatcttcccaaattt
tgtctcccgtttctgcaaccgggtaggcttgtaaaagttcgtaatggtgagcatgaattt
ggatggggtgtggtcgtcaactttcaaaaaaagcaaccaaagtcgagcggtcccatgcgt
ggtggtgatgaaccacaacctgaatatgttgtggatgtgttacttaactgtgacaaggaa
gggttacattcagtcgctgtgaggttgccacggccagcaaaggactccttgaaaagtgaa
atggccgtagtcccaataatgctgccgttaataaaagcccttagttctgtgagactgttt
cttcctaaagacctcagaccgttggataatagacaatcactgcttcgtgcattggaggaa
gtaaaaaagagattcccggatgggattcctctgctcgatccagttgaggacatgtcaatc
aaagatgatcgattgaaatcaattgtaaagaagacggaagcttttgagagaagaatgtat
aaacatcctcttcatacaagatcagatgtcactcaagtttatcagctttgcgagaataaa
acaaaattggcgaataaagtaaaagaagcaaaacgagcgttgaaaaaagcgcgcaccata
ttacaaatggatgaattaaaatgtcggaaacgtgttttacgacgacttggttacgctact
atgtccgatgttattgaaacaaaaggtcgagttgcttgcgagataagtgcagccgatgaa
ttgttgttaacagagttaattttcaacggagtattcaacaatcttacccctgcccagtgc
gctgctttgctctgttgttttgtatttgatgaaaagtcgaaaagcattccaaaactcagt
gaagaactcgccactccgttacgacaactacatgaaactgcacgaaaaattgcaaaggtt
tctaatgaatcaaaacttgttcttgatgaagaagaatatgttcaaaagtttaaaacaatg
ttaatggatgttgtccattcatggtgcaatggatcatcattcgcaaagatcgcagaaatg
accgacgtttttgaaggaagcatcataagatgcatgagaaggttggaggaattgctccga
gagatgtgtcacgctgccaaagccatcggtaacactcatcttgagaacaaattttccgaa
ggaattcaacttattaagcgtgacatcattttcgcagccagcttgtatttataa
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