Ciona intestinalis (yellow sea squirt): 100182611
Help
Entry
100182611 CDS
T01056
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100182611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100182611
03036 Chromosome and associated proteins [BR:
cin03036
]
100182611
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100182611
Coactivators
SAGA/TFTC/STAGA complex
100182611
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
100182611
STAGA complex
100182611
TFTC complex
100182611
SAGA complex
100182611
SLIK complex
100182611
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
TFIID_NTD2
CFAP251_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_SCAP
NBCH_WD40
DSE1_N
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR41
PAC11
Beta-prop_VPS8
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_DCAF4
PROPPIN
Cytochrom_D1
WDR54
LisH
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
100182611
NCBI-ProteinID:
XP_002120623
Ensembl:
ENSCING00000004104
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MKRSRSEHIQTAVLNYLKKRNYTDSEATFKQNFKLEETLLEMTSRVLRNNKISKSDSVSF
SIGSLDDYFHSFLELKTFVEKCVAQRKHSKLKGILFPVFIHSFLDLLLADRSTESTSYLR
RFGSVFDQSHRLLIKQIENLGIPQDQANLDMIEELRNCNGKIVLTDDDQLALKIFLQTQE
NLSLMKIINDRIQIVLPETDDQLNLSNGDFTSTNTSPQKVLSASKTPTKAKVEAMETAIT
NQQPIIISPPSVATTTNTTPSKHSTAPPVASLVSDITIADARKIIDDVRKSPPALTDLTL
IKFKGEGLIHATPSQDHSYIATGFDNSTVKLWRQGNRIPDCNLPTPDISCVHLGSDALED
VYDRLSMKTQQDVTSLNEDGVVSLHGHSGPVYDSCFTSDNKFLITCAEDSTVRLWDMQDL
KNKVIYDAHNRPVWCVDISAYDLYFATGSADHTARLWTTERTYPLRTYAGHQDSVGAIAF
HGNCSYLATADRVVRVWDVNSGKPVRVMTGHWAPVMCVAFSSNGRMLASAGEDYRIRLWD
VSSGNLVKEMRAHTDTIYSLAFNYDGSLLASCGADCSVYCWNTATISTTGDQKNQHLVAQ
WSLPNSTQSLINVDFKSTNKLFCYASAT
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggtcacgtagtgagcatatccaaactgctgtactaaattatttgaaaaaacga
aactataccgattcggaagcaacttttaagcagaatttcaagttggaagaaacgttattg
gaaatgacatctcgtgttttaagaaataataaaatatcgaagtcagacagcgtctcattt
tcgattggctcactcgatgattattttcattctttccttgaattaaagacgtttgtcgaa
aaatgtgtcgctcaaagaaaacattctaaattaaaaggcattttatttcccgtcttcatt
cattcgtttctcgacctattattggccgatcgttcaaccgaatccacctcatatttacga
aggtttggttcagttttcgaccaatcacatcgcttgctgattaagcagattgaaaatctg
gggattccccaagaccaagctaatttagacatgattgaagaactacgaaattgcaacggc
aaaattgttctaacggatgacgatcaacttgctttaaaaatatttcttcagacccaggaa
aatttatcacttatgaaaattatcaatgatcgtatacagatcgtgctaccagagacagat
gatcaactgaatttatctaatggtgattttacttctaccaacacttcacctcaaaaagtt
ctttctgctagtaaaactccaactaaggccaaagtagaagccatggaaactgccatcaca
aatcaacaaccaatcataatcagccctccttctgttgccacgacaactaacactacgcct
tctaaacactccacagctccaccagtggcatctttagtcagtgacatcacaatagcagat
gctcgtaaaataatcgatgacgtaagaaaatctccacctgctctgacagaccttacactt
ataaaatttaaaggagaaggtttaatacatgccacaccatctcaggaccacagttatatt
gcaacagggtttgacaactccactgtgaaactatggcgtcaaggaaatcgtataccagac
tgtaaccttcccacccctgatatatcatgcgtgcatcttggtagtgatgcacttgaagat
gtatacgacagattatctatgaaaacccagcaagatgttacaagtttaaatgaggatggt
gtagtgtcactgcatgggcatagtgggcctgtgtacgattcttgtttcacaagtgataat
aagtttttaataacttgtgctgaggattctacagtgagattatgggacatgcaggattta
aagaacaaagttatttacgatgctcataacagaccagtatggtgtgtggatatcagtgct
tacgatttatacttcgctacgggatctgcggaccatacagctcgactgtggacgacagag
cgtacataccccttacgaacttacgctggccatcaggacagcgttggagccattgctttc
catggtaactgtagttacttagctacagcggatagagttgtgagggtatgggatgtaaat
agtgggaagcccgttcgtgtaatgactgggcattgggccccagttatgtgtgtggccttc
tcaagtaatggacgaatgttagcaagcgctggtgaagattacaggatcaggttatgggat
gtttcctctggtaacttagtcaaggaaatgcgtgcacacacagacacaatatattctctt
gctttcaactatgatggctctctactggcatcgtgtggtgctgattgttcagtatattgt
tggaacaccgctactatatctactacaggtgatcaaaagaaccagcatttagttgcacag
tggagtctcccaaattcaacacaaagtttaataaacgtcgattttaaatcgaccaataag
ttattttgttacgcttctgctacgtga
DBGET
integrated database retrieval system
