KEGG   Ciona intestinalis (yellow sea squirt): 100182611
Entry
100182611         CDS       T01056                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100182611
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100182611
   03036 Chromosome and associated proteins [BR:cin03036]
    100182611
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100182611
   Coactivators
    SAGA/TFTC/STAGA complex
     100182611
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     100182611
    STAGA complex
     100182611
    TFTC complex
     100182611
    SAGA complex
     100182611
    SLIK complex
     100182611
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd TFIID_NTD2 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_IP5PC_F Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_VPS8 PROPPIN Cytochrom_D1 WDR54 LisH Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 100182611
NCBI-ProteinID: XP_002120623
Ensembl: ENSCING00000004104
LinkDB
Position
Unknown
AA seq 628 aa
MKRSRSEHIQTAVLNYLKKRNYTDSEATFKQNFKLEETLLEMTSRVLRNNKISKSDSVSF
SIGSLDDYFHSFLELKTFVEKCVAQRKHSKLKGILFPVFIHSFLDLLLADRSTESTSYLR
RFGSVFDQSHRLLIKQIENLGIPQDQANLDMIEELRNCNGKIVLTDDDQLALKIFLQTQE
NLSLMKIINDRIQIVLPETDDQLNLSNGDFTSTNTSPQKVLSASKTPTKAKVEAMETAIT
NQQPIIISPPSVATTTNTTPSKHSTAPPVASLVSDITIADARKIIDDVRKSPPALTDLTL
IKFKGEGLIHATPSQDHSYIATGFDNSTVKLWRQGNRIPDCNLPTPDISCVHLGSDALED
VYDRLSMKTQQDVTSLNEDGVVSLHGHSGPVYDSCFTSDNKFLITCAEDSTVRLWDMQDL
KNKVIYDAHNRPVWCVDISAYDLYFATGSADHTARLWTTERTYPLRTYAGHQDSVGAIAF
HGNCSYLATADRVVRVWDVNSGKPVRVMTGHWAPVMCVAFSSNGRMLASAGEDYRIRLWD
VSSGNLVKEMRAHTDTIYSLAFNYDGSLLASCGADCSVYCWNTATISTTGDQKNQHLVAQ
WSLPNSTQSLINVDFKSTNKLFCYASAT
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgaaacggtcacgtagtgagcatatccaaactgctgtactaaattatttgaaaaaacga
aactataccgattcggaagcaacttttaagcagaatttcaagttggaagaaacgttattg
gaaatgacatctcgtgttttaagaaataataaaatatcgaagtcagacagcgtctcattt
tcgattggctcactcgatgattattttcattctttccttgaattaaagacgtttgtcgaa
aaatgtgtcgctcaaagaaaacattctaaattaaaaggcattttatttcccgtcttcatt
cattcgtttctcgacctattattggccgatcgttcaaccgaatccacctcatatttacga
aggtttggttcagttttcgaccaatcacatcgcttgctgattaagcagattgaaaatctg
gggattccccaagaccaagctaatttagacatgattgaagaactacgaaattgcaacggc
aaaattgttctaacggatgacgatcaacttgctttaaaaatatttcttcagacccaggaa
aatttatcacttatgaaaattatcaatgatcgtatacagatcgtgctaccagagacagat
gatcaactgaatttatctaatggtgattttacttctaccaacacttcacctcaaaaagtt
ctttctgctagtaaaactccaactaaggccaaagtagaagccatggaaactgccatcaca
aatcaacaaccaatcataatcagccctccttctgttgccacgacaactaacactacgcct
tctaaacactccacagctccaccagtggcatctttagtcagtgacatcacaatagcagat
gctcgtaaaataatcgatgacgtaagaaaatctccacctgctctgacagaccttacactt
ataaaatttaaaggagaaggtttaatacatgccacaccatctcaggaccacagttatatt
gcaacagggtttgacaactccactgtgaaactatggcgtcaaggaaatcgtataccagac
tgtaaccttcccacccctgatatatcatgcgtgcatcttggtagtgatgcacttgaagat
gtatacgacagattatctatgaaaacccagcaagatgttacaagtttaaatgaggatggt
gtagtgtcactgcatgggcatagtgggcctgtgtacgattcttgtttcacaagtgataat
aagtttttaataacttgtgctgaggattctacagtgagattatgggacatgcaggattta
aagaacaaagttatttacgatgctcataacagaccagtatggtgtgtggatatcagtgct
tacgatttatacttcgctacgggatctgcggaccatacagctcgactgtggacgacagag
cgtacataccccttacgaacttacgctggccatcaggacagcgttggagccattgctttc
catggtaactgtagttacttagctacagcggatagagttgtgagggtatgggatgtaaat
agtgggaagcccgttcgtgtaatgactgggcattgggccccagttatgtgtgtggccttc
tcaagtaatggacgaatgttagcaagcgctggtgaagattacaggatcaggttatgggat
gtttcctctggtaacttagtcaaggaaatgcgtgcacacacagacacaatatattctctt
gctttcaactatgatggctctctactggcatcgtgtggtgctgattgttcagtatattgt
tggaacaccgctactatatctactacaggtgatcaaaagaaccagcatttagttgcacag
tggagtctcccaaattcaacacaaagtttaataaacgtcgattttaaatcgaccaataag
ttattttgttacgcttctgctacgtga

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