KEGG   Ciona intestinalis (yellow sea squirt): 100182759
Entry
100182759         CDS       T01056                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03020  RNA polymerase
cin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100182759
  09124 Replication and repair
   03420 Nucleotide excision repair
    100182759
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100182759
   03400 DNA repair and recombination proteins [BR:cin03400]
    100182759
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     100182759
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100182759
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 BIG2_C hNIFK_binding Maelstrom
Other DBs
NCBI-GeneID: 100182759
NCBI-ProteinID: XP_002127588
Ensembl: ENSCING00000011474
LinkDB
Position
2:complement(4293504..4295642)
AA seq 145 aa
MSSASTKALSTVLTEQEEDSSQLQFPQEFESAETLLNSEVHMLLEHRKSQNENADDEQEL
SEVFMKTLNYTQRFSRFKNRETITSVRGLLLQKDLHKFELASLANLCPETAEEAKALVPS
LEGRFEDEDLQQVLEDIQTKRSFQC
NT seq 438 nt   +upstreamnt  +downstreamnt
atgagtagcgcatctacaaaagcgttatccacagttcttaccgagcaggaagaagattct
tcgcagttgcagttcccacaagagttcgaaagcgcagagactttgcttaattcagaagtt
cacatgcttctggagcatcgaaaatcccaaaacgaaaacgcagatgacgagcaagaactt
tcagaagtctttatgaaaactttgaactacacgcaacggttcagccgattcaaaaaccgc
gaaacgattacgagcgttagaggcttgttgctgcaaaaggatcttcataaattcgaactg
gcatcacttgcaaatctgtgtccagagacagcagaggaagcaaaggcacttgtcccaagt
ttagaaggaagatttgaggatgaggaccttcagcaagtcttggaggatatccaaaccaaa
cgaagttttcaatgttga

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