Ciona intestinalis (yellow sea squirt): 100182767
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Entry
100182767 CDS
T01056
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B-like
KO
K03253
translation initiation factor 3 subunit B
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100182767
03012 Translation factors [BR:
cin03012
]
100182767
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100182767
Translation factors [BR:
cin03012
]
Eukaryotic type
Initiation factors
eIF-3
100182767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
RRM_1
zf-CCCH_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100182767
NCBI-ProteinID:
XP_002130037
Ensembl:
ENSCING00000003620
LinkDB
All DBs
Position
3:3940753..3949732
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AA seq
699 aa
AA seq
DB search
MVTSMDGEQDWEDVKPRKKRQDDIINGSEEEPDFSDPEDFEEDVSDSEFLADVLEKKPKE
ADGIDAVIVVDNVPVVGEERLGKLKIVITKIFSKFGKIHSDYYPEFEGKTKGYIFIEYEQ
DKSAKDAVKGADGYKLDKSHAFRVNLFSDFEKYKNVTENWTPPEKQPLKDVGNLYYFLED
EDCNNQFSVIYEGGVKTGIFLNTAAEPSLLEQRERWTETYTRWSPKGAYLATFHAKGIAL
WGGEKFRQIQRFTHPGVQLIDFSPCERYLVTFSPMQDPSRGDDIQAITVWEIFTGLKKRS
FHADMSGEDRQWPIFKFVSYDGKYFARKAKGVLSVYETPSMGLVDKKSIAIDGISEFFWS
PADNMLAFWIPENNQIPARVTILAIPSKKEVRVKNLFNVSDIRLNWHKQGKFLCVKVDRY
NKAKKANISNFEIFHIMEKQVPVDIVELKEQVIAFAWEPTGNKFCCLHGEAPRISAMFFE
IKGGKIEHLGTMEKKQATHIFWSPAGQFVLLVGLNSSSQLEFIDTADMTVMNSGEHHMVS
DVEWDPTGRYLVSIVSWWEHKIDNAYWVWSFQGRLMRKYPMEQLCQLLWRPKPKSILSAD
HIKKIRKNHKSFSKIFEAKDRLLQSRVSKEIIDKRRSLMEEFTNYRKHCNEVYQHTTPYR
RELRNGVMTDEVDYQAEDLDEVTVEILIEEEETILNDKE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggtaacgagcatggacggtgagcaagattgggaagacgtaaaaccgcgtaaaaagcgc
caggatgatataataaacggcagcgaggaagagccagactttagcgatcccgaagatttt
gaagaggatgtttcggattcggagtttttggccgatgtgctcgaaaaaaagccgaaagaa
gctgacggtatagacgcagtgattgttgttgacaatgttcccgtagtgggagaagaaaga
cttggaaagttgaagatagttattacaaaaatattttcaaagtttggaaagattcacagt
gactattatccagagttcgaaggaaaaacaaaaggatacattttcattgaatatgaacaa
gacaaatcagccaaggatgcggtcaaaggagcagacggatacaaacttgataaatcgcac
gcttttagagtgaatttgttcagtgactttgaaaagtacaaaaatgtaactgaaaattgg
accccgccagaaaaacaaccattgaaggacgtgggaaatctttactactttcttgaagat
gaagattgtaacaatcaatttagtgtaatatatgaggggggtgtgaagacaggtatcttt
ctgaacacagcagctgaaccaagccttttagaacaacgagaacgttggacagaaacttac
acgcgttggtcaccaaaaggggcgtacctcgctactttccatgctaaaggtatcgcgttg
tggggtggtgaaaagtttcgccaaatccaacgttttacccatccaggggttcaactcatt
gatttttctccatgtgaaaggtatttagttaccttcagtccaatgcaagaccccagcaga
ggggatgatatccaagccattactgtgtgggaaatatttaccgggttgaaaaagagaagt
ttccacgctgacatgtctggtgaggacagacagtggccaattttcaaatttgtatcttat
gatggaaagtattttgcaaggaaagcaaaaggagttctgagtgtatatgaaacaccgtca
atgggcttagtggataaaaagagcattgctattgatggaatcagcgagttcttctggtct
cctgctgacaacatgttggcgttttggattcctgaaaacaaccagataccggccagagtg
accattcttgcaattccttccaagaaagaagtccgcgtgaaaaacttattcaatgtttct
gatattcgcctcaactggcacaaacaaggaaagttcctttgtgtgaaggtggacagatac
aacaaagccaaaaaggccaatatttccaattttgaaatctttcatataatggagaagcaa
gtgccagtcgacatagttgaactcaaagaacaggtaattgcttttgcatgggaacctact
ggtaacaaattctgctgtctgcacggagaagcacctagaatatcagcaatgttctttgaa
attaaaggagggaaaatagaacatctcggaactatggaaaagaaacaagctacacatata
ttctggtcacctgctggacaatttgtgcttctggttggattgaacagttcaagtcaactg
gagttcatcgacactgccgacatgacagtaatgaacagtggtgagcatcatatggtatcg
gatgtagagtgggatcctactggaagatatcttgtctccattgttagctggtgggaacat
aagattgacaatgcttactgggtgtggtcattccaaggaaggcttatgaggaaatatccc
atggaacaattatgccaactactgtggagaccaaaaccaaaatccattctctctgctgat
catattaagaaaatccgtaagaatcacaagtcctttagcaagatctttgaagcaaaggac
agacttcttcagagccgtgtttccaaagaaattatcgacaaacgtagatcgttgatggaa
gagtttaccaactacagaaaacattgcaatgaagtttatcagcacacaactccatataga
agagaactaagaaatggtgttatgactgatgaagttgactaccaggctgaagatctagat
gaagtgactgttgaaattttaattgaggaagaagaaactattttgaacgataaggagtaa
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