Ciona intestinalis (yellow sea squirt): 100182805
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Entry
100182805 CDS
T01056
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100182805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100182805
03036 Chromosome and associated proteins [BR:
cin03036
]
100182805
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100182805
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100182805
mRNA degradation factors
5'-3' decay
Decapping complex
100182805
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100182805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
100182805
NCBI-ProteinID:
XP_002123307
Ensembl:
ENSCING00000007421
LinkDB
All DBs
Position
2:complement(1116675..1119209)
Genome browser
AA seq
461 aa
AA seq
DB search
MANIAHSSHNNNSVLNQGKLGGPRSGPINSKSMSKEKSVHSGQVGEGEDWKANLNRPPVD
NRQKTTDVTSTKGVEFEDFCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDVLARAKN
GTGKSGAYLIPMLGRCDLNKDHIQALVLVPTRELALQTSQIAIELSRHMGALNVMVTTGG
TNLRDDIMRLENSVHIIVATPGRILDLINKRIAKVDHCNMIVLDEADKLLSQDFKQMMDN
IVTQLPVSRQILLFSATFPITVKDFMLKHMKKPYEINLMEELTLKGVSQFYAYVEEKKKV
HCLNTLFSKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQEYRNRVFHDFRQ
GMCRNLVCSDLFTRGIDIQAVNVVINFDFPKMPETYLHRIGRSGRYGHLGLAINLITYDD
RFSLARIEEELKTDIKPIPPVIDKSLYVAEFSKEENDESGK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggctaacatagcacattcaagccataacaataactcagttttgaaccaaggcaaactt
ggtggccccagaagtggcccaataaactctaagtccatgtcaaaggaaaagtcggtgcac
tccggacaagttggtgaaggggaggattggaaagcaaatctgaacagacctccggtcgac
aaccgccagaaaaccactgatgttacctcaacaaaaggtgtagaatttgaagacttctgt
ctgaagcgtgaactcttgatgggcatatttgaaaaaggttgggagaagccttccccgata
caagaagaaagcattccaattgctctgtctggaagagatgtgttggcaagagcaaaaaat
ggaaccggaaaatctggcgcgtaccttattcccatgctgggtcgctgtgatttaaataaa
gatcacattcaagcattggttcttgttcctacacgagaacttgccttgcaaacatctcaa
attgccattgaattaagcaggcacatgggagccctgaatgttatggtgacaactggtgga
acgaatcttcgtgatgacatcatgagattagaaaacagcgttcatattatcgtcgcaaca
ccaggccgtatattagatttgattaacaaacgcattgccaaagtagatcattgcaacatg
attgtactggatgaagcagacaaacttctgtcccaagattttaaacaaatgatggataac
attgtcacacaactccctgtaagccgacaaattcttcttttctctgctaccttccccatt
accgtcaaagattttatgctgaagcacatgaagaaaccctacgagataaacctcatggaa
gaactcacactgaaaggggtgtcccagttttacgcctatgttgaggaaaagaagaaagtg
cattgtctcaacacactgttctcaaagctgcagatcaaccaatcaattattttctgcaac
tcaacacatagagtcgagcttcttgcgaaaaagataacagagctcggttactcctgcttc
tacattcatgcacgaatgaaacaagagtacagaaaccgtgtcttccatgattttcggcag
ggcatgtgccgaaacctcgtatgcagcgacttgttcactcgtggcatcgacattcaagca
gtgaacgtcgtcatcaactttgactttccaaaaatgcccgagacttacctgcatcgtatc
ggacgctcgggaagatatggccatcttggtttggccatcaacctcatcacatacgatgac
cgtttcagcttagcgagaattgaggaagaactgaagacagatatcaagccaatcccacct
gtgatcgacaaatcactttacgttgccgaattttccaaggaagagaatgatgaaagtgga
aagtaa
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