Ciona intestinalis (yellow sea squirt): 100182926
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Entry
100182926 CDS
T01056
Name
(RefSeq) nucleoporin GLE1
KO
K18723
nucleoporin GLE1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100182926
03015 mRNA surveillance pathway
100182926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100182926
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100182926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GLE1
LRAT
Motif
Other DBs
NCBI-GeneID:
100182926
NCBI-ProteinID:
XP_002123331
Ensembl:
ENSCING00000020746
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MSLDVCEQLRKTTKGKLVYHNDNKPLEFSNQLPSCVFDLPDIPGVLEALEENAFVDEDEF
LLINKLTALTIDDSSTQLKQPDVDILPEDSTIALLDLREKQLSQNLIQLQVGKYHDATME
AHNEAKRKFKEREERIRKSRMEERKKWNLITESEREEAEKIRQEFKEQHHKRNNLLKTRM
LEAERRKVEQNKQRLKHVEGVVTKCAKLNEDVMLQFHNDSSIVSSNPAIVSMATECGRKF
SGIINIFKDSKTSGSMDKVTAASITDDCSVHQEMCDNLVSAIEKLKEEEIIKKKELEQRI
EKEQEEMREKEKKEKERIKASLDEDPENKFPSLPKELQLSVSRSAYAHHQIMIKSYKDFD
VKSKEFTSSKDKQLNKVIIGISNVIGSCVASITSRSGSDVKNKLSDLNGLLQGRTISSGG
STASIKGYAGASNHAVIFMARKFVKQAESQVSSNHSTAFGLALTILGVWAQNDDFGSVFL
GLMQTKCPFLVPFYVPKTDGQSDEEYSRSRGYRVTNGVVESQDHYLSRMSGLIRTYAAII
QSPLPPGVRNNPHGIAQGWMWITRMLNLEPWPEITATILFDFLEVAGHALMAAYGRQFEK
LLYAICHDYFPKIKEVSGSRGGPVLRLKTFLKECIQHKKVSKPDGHLSAEFWGTHHHAGI
VGN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggacgtttgtgaacaactgagaaaaaccacgaagggaaaactggtgtaccat
aatgacaataaacctctggagttttcaaaccagcttccctcctgtgtgtttgatcttccc
gacatcccgggtgtcctcgaagcgctggaggaaaatgctttcgttgatgaagatgagttc
cttcttataaacaagttgacagctttgacaatagatgatagctctactcaattgaaacaa
ccagatgttgacatactacctgaagattccacgattgctttgcttgatttaagggaaaaa
caattatcacaaaaccttatacagttacaagttggtaaatatcacgatgccacgatggag
gcgcacaatgaggcgaagagaaagtttaaagagagagaggagagaatcaggaagagcagg
atggaggagagaaagaagtggaacttgataacggagagtgaaagagaagaagccgagaaa
attcgtcaagaatttaaagaacaacatcataaaagaaacaatctgcttaaaactagaatg
ctggaagctgaaagaaggaaagttgagcaaaacaagcagaggttaaagcatgtagaagga
gttgtaacaaaatgtgcaaaactaaacgaagatgtcatgcttcagttccataatgacagt
tctattgtatcatccaatcctgccatagtttccatggcaactgaatgtggccggaagttt
tcgggcattataaacattttcaaagattccaaaacatcgggttcgatggacaaagtaacg
gcagcttctataactgatgactgcagtgtacatcaagaaatgtgcgataatttggtctca
gcaatagaaaaactgaaagaagaagagataattaaaaaaaaggaactggaacagagaatt
gaaaaagaacaggaggagatgagagaaaaagagaagaaggaaaaggagagaatcaaagct
tctttagatgaagatcctgaaaacaaatttccttctttgcccaaagaattacaattatcc
gtcagtcgatcggcgtatgctcaccaccagataatgataaagagctacaaagactttgac
gtcaagtcaaaagaatttacttcttctaaagataaacagttaaacaaagtaataattgga
ataagcaatgtgattggatcctgcgtggcttctatcaccagcaggtcaggttctgatgta
aaaaacaaactctctgacctcaatggtttattacaaggtcgtacaatatcatcgggtggg
tcaactgccagtattaaaggatatgccggcgcttctaatcatgccgttatatttatggca
agaaaatttgtgaaacaagctgagagtcaggtttcgtctaatcacagcacagcgtttggt
ctcgctctgacgattcttggcgtttgggcgcaaaatgatgactttggttccgtgttcctt
ggtctgatgcaaactaaatgtccgtttctcgtccctttttatgttcccaagacagatgga
cagtcagatgaagaatatagtaggtcacgaggttacagagtaaccaacggagttgttgaa
agccaggatcattatttgagccgaatgtccggacttattcgaacctacgctgccatcata
caatctccactgccacccggtgttcgtaacaatccacacggcatcgctcaaggctggatg
tggatcactagaatgttgaatttggagccatggcctgaaataacagccacaatattgttt
gactttcttgaagttgctggtcacgctctaatggctgcatatggccgacagtttgaaaag
ctcttatacgcaatatgtcatgactattttcctaaaattaaagaagtttcaggtagcagg
ggaggcccagtgctccgtttaaaaacgtttttaaaagaatgcattcagcataagaaagtt
tcgaaaccagatggacacctgagcgcagagttctggggtacccatcatcatgcagggatt
gtcgggaattaa
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