Ciona intestinalis (yellow sea squirt): 100182961
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Entry
100182961 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100182961
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100182961
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
100182961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
zf-C3HC4_2
PDZ_6
zf-RING_UBOX
PDZ_2
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-RING_2
TRAF3_RING
Prok-RING_4
RING_XB3-XBAT31
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
100182961
NCBI-ProteinID:
XP_018668328
LinkDB
All DBs
Position
8:complement(4536777..4572216)
Genome browser
AA seq
1088 aa
AA seq
DB search
MGFPLDLFDRDVDEAFICWICEKVLHDPLATPCGHVFCASCANAKLSESNSCPKGCPTSL
SAKELNRVLPLSKLIGKLNARCSNWCKGCPFVGPLHCSEEHMLGCEYHPQICPECGKEAE
DCTCSLEDNKEIKEENLSKEELRKRTQVLEEQLIVLSKKLQKMETLFPTLEYSTSNDEDY
EYEVNGQDLSGASHKEAAHAFKNAPEPITVVLRRNNTKNNDDDVIAPRSSFKAPSFTPSV
SCAATQTSQVQDNLCFCQTLIQNCQNAQTNLSALIMSELMRYKNAHSGLYDVTGHTADTL
GRSFMLEDEDEVFGFEYEEVELKRSSNQEKLGIMLQDQRDPYTDRIRVTVSEVAPFSIAE
KSQNIQTGDQIVKINGTPVTSMAEASTLLHKDIPSITFMIRRQHPYDDEQWNEDFEGDDV
LRDVTNYDDVMSATSDESRPRFLEQRTRDGGIEYAAIVSQKLATTARTTDSGTSHSSVDS
SPNEKDSGIGRTTDGSSVQSVTDNATSTNTQDSRRFGTDSSRGSSAPHSVAKEFTFVASK
DYHYPKRPFDKPVDCHSTDSAKGSMERSITEEKSNQFQRLSDAIQHLELEDAPKSPNCTP
DDVDDDVSPWVKIARQDYEDKIRQIENKDSRNFHPAGISSTANMEDVIVAIAAERNSNSA
TDNTSSAYSTGESFRSTSTASAPRISIDSLSPPLSPKKSITKPHTGPTISYISSDANSDG
EGPACYLTHAEDSESEGFEDAGVEFSSIFTSATPPKLPPTPLPRLLHPPQGPNFHTSASL
TASTKELWKAAAAVAKNRRHTQTPETIEQNSMSRSRNRSDSRSVGDASSSKDRSESETVV
ASQSRNSAGESTCTDLPASNHLTSKRHRDPNSFSKSAGSNDFPSRSKNHKFRRSSDNMNP
SVLCNRPNMATRSQSYTEGSAPSMDNIKGATNTVGEGSSNGDVRMEWKVRVSRDGTRYIT
KRPVREKVLRDREQKLLVERCGVTTDDDAMTELKLGRHWSREERKRHLRHAREKKRRRDF
MQRCRLEVLTENVPADTDIVELSHKKMERRKHKRMLLDSFVTVQEILAHGDKTTGTAALN
PLLSVTYI
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgggttttcccttggatttatttgaccgtgatgtggacgaagcttttatatgctggata
tgcgagaaagtattacacgaccccttagctactccttgtgggcatgtgttctgtgcgtct
tgtgccaatgcgaagttaagtgaatcaaactcttgcccaaaaggatgtccaacatcgctt
tcagcaaaggagctaaaccgagtcctgcccttgtcaaagttaataggaaagcttaatgct
cggtgctcgaactggtgtaaaggttgtccgtttgttggaccgttacattgctccgaggag
cacatgctcggatgcgagtatcatccgcaaatatgtccggagtgcggcaaggaagcagag
gattgtacttgttctttggaagataataaggagataaaagaggagaatttgagcaaagag
gagttacggaagaggactcaagttttggaggagcagcttatcgtgttgagcaaaaaacta
cagaaaatggaaacgttgtttccgactttggaatattcaacttctaatgatgaagattac
gagtatgaggtaaacgggcaggacctttctggagcatctcacaaagaagcggcccacgct
ttcaagaacgccccggaacctattactgtggttcttcgacgaaacaacacaaagaacaac
gacgatgacgtcattgctcccagaagcagcttcaaagcaccctccttcaccccctccgtg
tcatgcgccgccacgcaaacgagccaggtgcaggacaacctttgcttctgccagaccctc
attcagaactgccagaacgcacaaacgaacctctccgcacttataatgagcgagctgatg
cgatataaaaacgcccactcgggattatacgacgtgaccgggcatactgcagatactctc
gggagatcttttatgcttgaagacgaggacgaggtctttggttttgagtacgaggaggtt
gaactaaaacgttcgtccaaccaagaaaaactcggtattatgctacaagaccagcgagat
ccatacaccgatcgaatccgtgtgactgtcagcgaggtcgcaccattctccatcgctgaa
aaatcccaaaacatccaaaccggcgaccaaatcgttaagatcaacggtacgcccgtaact
tccatggccgaagcgtccaccctccttcacaaagacattcccagcatcacattcatgata
cgtcggcaacacccatacgacgacgagcagtggaacgaagatttcgagggcgatgacgta
cttcgtgacgtcacgaattatgatgacgtcatgagcgcgacatccgacgaatctcgtccg
cgttttctggaacaaagaacgagggacggagggattgaatacgcggcaatcgtctcgcaa
aagcttgccactactgccagaacaactgacagcgggacctctcatagctcggtggattcc
agtcctaatgaaaaagatagcggcatcggtcgtaccaccgatggcagcagtgtacagagc
gtcaccgataatgcgaccagtaccaatactcaagattcgagacggttcggaaccgactca
agtagaggaagttccgctccccactcagttgccaaggagtttacctttgtagcatccaag
gattaccactacccgaaacgacccttcgataaaccagttgattgccactcgaccgactcc
gcaaagggttccatggaaagatcgataacagaagaaaaatctaaccaattccaacggctg
agcgatgctatacagcacctagagttagaagatgcaccaaaaagtccaaactgtacaccc
gatgacgtagacgatgacgtcagtccatgggtgaaaatcgcccgtcaggactacgaggac
aaaattcgtcagattgaaaacaaggactcccgaaatttccaccctgctggtatttccagc
actgcaaacatggaagacgtgatcgttgctattgcggctgaacgaaactcaaacagcgca
actgacaacacgtcatcagcttacagcacaggggaaagtttccgtagcacaagcactgcg
agcgctccccgaataagcattgactctctatcgcctccactgtcccctaaaaagagcatt
accaaaccgcacaccggacctactatatcttatatcagcagcgacgctaatagcgacggt
gaagggccggcctgttacctcacccacgccgaggacagcgagtctgaaggttttgaggac
gcgggggttgaatttagttccatattcacttctgctaccccaccgaagctcccacccacc
ccgttacctaggttacttcacccacctcaaggcccgaacttccacacgtcagcttcgctt
acagcatcgacgaaagagttgtggaaagcagcagccgcagttgctaagaatcggcggcat
acccagacacctgaaacaattgaacaaaactcgatgtccaggtcaaggaaccggtcagat
tccagaagtgttggcgacgccagtagcagtaaggacagatctgaaagcgaaacagttgtt
gcatcgcaatctcggaactcggccggtgagagcacttgcactgacttgccagcttccaat
cacttgaccagtaagcgtcaccgggatccgaacagtttcagtaaaagcgcaggaagcaac
gatttcccttcaagatctaagaaccacaaattccgccgctcgtcggacaatatgaaccca
tctgtgttatgtaatcgacccaacatggcgacgaggtctcagtcgtataccgagggttca
gcaccgagcatggataacattaaaggtgcaacgaacacagtgggtgaaggtagttcaaac
ggtgatgttcgtatggagtggaaagtacgtgtgagccgggacgggaccaggtacatcaca
aaacgacctgtgagagaaaaagttcttcgtgatagggaacaaaaattgctcgttgaaaga
tgcggggtgaccaccgacgacgatgcgatgacagagcttaagctcggtcggcattggtca
cgagaggaacgtaagcgacacctgcggcatgcgcgagagaagaagcgtcgtcgggatttc
atgcaacgttgtcggctggaagttctcactgaaaacgtaccagcggacacggacattgtc
gagttaagtcacaagaaaatggaacgtcgtaaacataagcgtatgctactcgacagcttt
gtaactgtgcaagaaatcctagcgcacggggataaaactacgggaacggctgctttgaat
cctctgctcagtgttacctacatttga
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