Ciona intestinalis (yellow sea squirt): 100182963
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Entry
100182963 CDS
T01056
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100182963
Membrane trafficking [BR:
cin04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100182963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
Motif
Other DBs
NCBI-GeneID:
100182963
NCBI-ProteinID:
XP_002125131
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MSINARFRKYKPVGPLTPAKWWIYAYRSVVGTIVANSRKLSWVNIKKHRDNVHQYKALYK
QKLEEKTPNQGLLDQLLKAEDALDIFNITLTRKQAEIELVREGSEILNAEYLLQHNKQSS
SSWFSGWFSSKSSKPEKPKEPEGLDSVMTASEKKELYQSIGYIEGELLDDSDLPKSYVKT
HLTVSLKKVSLELCNKKVCAEDILQLCFYGINLVVKQRPSAKAIRLTGDLESLAMYGVPQ
NNQTPTIVAHDVDSTTKQSLFHFDFETNPLDETCDQRLVADSKPVTMVYDAVTVNNLTTF
FKPPENTRLQRLRTVAASTYNDVKNQTTTGLKHIIKNKQITQINVHFSSSRFVLPKDGTV
QSNSHALVLDLGELIVVNNSCFDEKSVDNRGVAEIQSRIYDAFNINVKNIQLVLSRKGEE
PTSSNLHILEPINISLCAEKCLVENDSSLPVIKVTGSLPSVALKLSDLKLLQIIQLVESI
PLPPEQPISDVEEIEVESWPATMTDTDDVTLVEKTISKHFDESIVLQQSGVDSSSDEEFF
SAESECEEDDEPKKKSKKSKKAKLVKQNVQKNQVTNLQLDFTISQISICLDEEYYVTNIV
ELISLNMNVLSVHISVRTWDTNMKLSLETFDVVQPQFQTADNTPLVLMNSEVSSDSDTLF
HGEIIQVNPKSPDFVQLYNRTKQLVFVRFGSLCITAHVQAVLKLQSFVSSLTHLLESQAA
KVIEPTVAAHETSEKSDLATKSDVSIIPSNVKDSDSKVVDLKLTARIDAVRVNLVDEKEE
ISIVEIEGIKSSVSITKQWIKLNAELHKLKVTDTDIKTLYPDVVQSDGDEVILLEFVNYN
NPNTGVDSDVNKPHAVDGSLKLKLGCVKVVFLNKFVEKLQKYGNSLSQGKEILEAGSAAQ
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattaatgccagattccgaaaatacaagcccgttggtccattaactccagctaaa
tggtggatatacgcttaccgtagcgttgttggcacgattgttgcgaactcacgaaagtta
agttgggtgaacatcaagaagcatcgcgataatgttcatcaatacaaagctctatacaag
caaaaactggaagaaaaaactcccaaccagggtcttcttgatcaacttcttaaagcagaa
gatgctcttgatatttttaatattacactgacaagaaaacaagctgaaatagagcttgtt
cgtgaaggtagtgagatattgaatgccgaatatcttctgcaacataataaacaatcatca
tctagttggtttagtggatggttttcaagtaaaagttccaaacctgaaaaaccaaaagaa
ccagaaggcctggacagtgttatgactgcttcagaaaagaaagaactttatcaatctatc
ggttacattgaaggtgaattacttgatgatagtgatttaccaaagtcttatgttaaaaca
catttgacggtcagtcttaaaaaggtttctttggagctatgcaacaaaaaagtttgtgct
gaagatattttgcaactgtgtttctatggaataaatttagttgtcaaacaacgtccatct
gcaaaagctatccgtttaactggtgatcttgagtctttagccatgtatggtgttcctcaa
aacaaccagactccaactatagttgctcatgacgtagattccacgacaaaacagtcgtta
ttccactttgattttgaaaccaacccgttagacgagacatgtgatcagaggcttgtagct
gattcgaagccagtaacgatggtgtatgatgcggttacagtgaacaacctcaccacgttt
tttaaaccacctgaaaatactcgactacaaagattacgtactgtagctgcttctacgtat
aatgatgtgaaaaaccaaacaacaacaggattaaaacacattataaagaacaaacaaata
actcaaatcaatgttcatttctcatcttcacgtttcgttttacccaaagatggaactgtg
caaagcaactctcatgcattggtgcttgatcttggagaactcatcgtggtaaacaattct
tgttttgatgaaaaaagtgtggataacagaggagttgctgaaatacaatcacgaatatat
gacgcgtttaatattaatgtcaagaatattcagcttgtgttatctcgaaaaggagaggaa
ccaacgtcgtctaatttgcatattcttgaacctatcaacatttctctctgtgctgaaaaa
tgtttggtcgaaaatgattcctcgttgccagtgataaaagtaacaggatctttaccatcg
gttgcattgaaattatcggatttgaaacttctgcaaataattcaactggttgaaagcatt
cctttaccgcctgaacaaccaatatcagatgttgaagaaattgaagttgagagttggcca
gctacaatgacagatacagatgatgtaacgttagttgagaaaaccatcagcaaacatttt
gatgaatcgattgttttacaacaatctggtgttgattcatcatctgacgaggaattcttc
agcgctgaatccgaatgtgaagaagatgatgaacccaaaaagaaatccaagaaaagcaag
aaagcaaaacttgtgaaacaaaatgttcaaaaaaatcaagttaccaatctgcagttggat
tttaccattagccagattagcatctgccttgatgaagaatattatgttaccaacattgta
gagttgatatctttgaatatgaacgtcttatccgtccatattagtgttcgaacttgggat
acaaatatgaaactttcattggaaacattcgatgttgttcaaccccagttccaaacagcc
gacaacactccacttgtattgatgaactctgaggtgagttcagattctgacacgttattc
cacggagaaattattcaagtgaatccaaaatctcctgactttgttcaactttacaatcgc
acaaagcaactagtgtttgtaaggtttggatccctatgtataacagctcatgtacaggct
gtattgaaacttcaaagctttgtttcatcgcttactcacttattagaatcacaggcagct
aaagttattgaaccaactgtagcagcacatgaaacatcagaaaaaagtgaccttgcaaca
aaatctgatgtctccattatcccatctaatgtaaaggattccgattcaaaggttgtagat
ttaaagttaacggcaagaatagatgctgttcgcgtcaaccttgtggatgagaaagaagaa
attagcattgttgagattgaaggcatcaaatcaagtgtatcaatcacaaaacaatggatt
aaactgaatgctgagcttcataaattgaaagttaccgacacagacatcaagactttgtat
cctgatgtcgttcagtcagatggtgacgaagttattctgttggaattcgtgaattacaac
aatccaaatactggggttgattctgatgtgaacaaaccacacgctgtggatggaagtctg
aagttaaagcttggatgtgtgaaggttgtgtttttaaacaagtttgttgaaaagttgcaa
aaatatggaaatagtttgtcacaaggtaaagaaatccttgaagctggatctgctgcacag
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