Ciona intestinalis (yellow sea squirt): 100183099
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Entry
100183099 CDS
T01056
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100183099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100183099
Membrane trafficking [BR:
cin04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100183099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
TPR_VPS8_2
WD40_CDC20-Fz
TPR_Vps41
Beta-prop_EML_2
zf_RING_Vps8
ANAPC4_WD40
WDR55
zf-RING_Vps41
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_2
DUF627
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
PEP5_VPS11_N
ELF
Motif
Other DBs
NCBI-GeneID:
100183099
NCBI-ProteinID:
XP_002121576
Ensembl:
ENSCING00000006340
LinkDB
All DBs
Position
2:4819007..4838426
Genome browser
AA seq
1340 aa
AA seq
DB search
MEDFEEFDDNDFDIPEVSVPTLESILNESDEAEEDPLTFLNETNESNPDDEANTKVNGKV
NGTFLPELNVLKNWETSSITSSDSKKDKSTSLNHGEVLVVQKMESLSRQMVSAVDRVNAG
RPTSLAVSNLIAIGTTRGLVILFDSSQALKYCLGSIQIGSKYGSVTALTFNTDTTRLLVG
YAKGEILMYDVTNGKLLRTITDAHPPGSAVLHIKFTDDPTLAVCNDSGGSVFELNFRRLM
GVRSCESRCLFSGSRGEVCAISTLHLNKNIADHPLRDRHMLAMGTLTKILVVVLRPQIKI
VFAHRLTTNPTCVPMLAWQLTVCHSEGMRLIEPVLLFGRGDVLYFFQVKCDGWDAINFVH
LRTMNITYKLINMAWLNSRTILLLDVRENLHVVDVDSQTGLQTKSIDHTKLIYSSSAFKS
LANGGNVSQALAVIGEHACYHSMVQHNGKVYFLGEESVLASNITTWRKRIDFALERGHKH
ALDLALMFYDNSAKAVVGLPADPEQQKNLVSDVLLDVLVEFVDLSMTKLCPDSGKLQVLI
SFYRNVVPVCVNHCLHIGRVDVLFGRIYERFRVDCIAHGAFLECLEPYIMNDKLQTISPE
VMQDFVAHYQAKGMLSSVESCLLHLDVSSLDLHQVLHLCWAHGLYDAIISIHNRGMKDYF
GPLFELLSILQAALSTGAPLSEKMTTLGNKLLVYVSCCLAGVAYPHGLLDDETSTSVKNQ
MFETLIHPSISELKTHQLYPIIHIFLRFSTKEFLNVLSLSISEPHFQGREGFSKVQNFVD
VLLQVMLESQGFRPDQIGCLFTFLARLSARQNSQIHLNETLKHQVLEFLTTPSDHATDHE
ERQQALVDLLQCGFIEESYTPRLVHLAGQASFFRVLRFLHTQQRKFDLVFVAYVQDPAQT
DNTFTYVEDVLTSPQYTEQEKQMLKVKVLEHIKDLININGKKSVNLVTNLLQGTIQTIAA
KLHDEPFVLYTFLRGLFINRDDEQTDFIQDSYFDDDVTYEAPAASTDPDTCELYLSLMCQ
FGRAEVLQFVQDCEYCRPHKALEIVRRYRVDEATAFLLEKSGDISAAFNILLNAAHEKIK
LLSEDDESLHQDDAMSAVDDVIRLCQRNSRKLQEKQREKLWFSLLDVVLKPQHNMDMSED
KEVAKQLAQRVLTSMIGHMTLPAVLQKIIQDPAYKSGKFGEIRNLLLGMLETYQYERTLL
NTTLNLLGRDRHRSLASLHKNVVHGVAPKSQFCLICAKSVLNNQQKTENLIIFRYGNVYH
ENCLNKERRERSSTKVGNDVRNFESNKKMENFRDGLLMEMKNRNLKQTPSTATKSGPDVS
EQSFNPKNFKLRTKAPPIKF
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggaggattttgaagagtttgacgacaatgattttgacataccagaagttagcgtgcca
actctggaaagtattttaaatgagtcagatgaagctgaagaggacccactcacatttttg
aatgaaacaaatgaaagcaatcctgatgacgaagctaatactaaagtaaatggaaaagtc
aatggtacatttttaccagaattgaatgtcttaaaaaactgggaaacttcttcaattaca
agcagcgacagcaaaaaagacaagtctacttcacttaaccatggggaagtgttggtggtc
cagaaaatggaaagtctttcaaggcagatggtatctgctgttgatagagtgaatgctgga
agaccaacttctcttgctgtttcaaacctgatagcaattggtacaacgagaggattagtt
attctattcgattcctctcaagcattgaaatattgtcttggttcaattcaaattgggtca
aagtacggctcggtaactgctctaacattcaacaccgacaccacacgtttgttggtgggg
tatgcaaaaggagagattctaatgtacgatgtgactaatggaaaacttctacgaaccatt
acggatgcccatccacctggttctgctgtgttgcacattaagttcacagatgatccaaca
ctggcagtatgtaacgatagtggaggttctgtgtttgagttgaatttcaggcggttaatg
ggtgtgcgctcatgcgaatcgagatgtttgttctctggaagtcgtggggaggtatgtgcc
atcagtactttacatttaaacaagaacatagcagaccatccacttagagatcggcatatg
ttggcgatgggaacactcactaagatccttgtcgtcgtattaagacctcaaatcaaaata
gttttcgcacaccgcttaactaccaacccaacgtgtgttccaatgttagcgtggcaactt
acggtttgtcacagcgaaggaatgcgactcattgaaccagttttactatttggacggggc
gatgttctttatttctttcaggtcaaatgtgatggttgggacgcaattaactttgttcat
ctaaggacaatgaacatcacctacaagttaattaatatggcttggcttaactcacgaacc
attctattgcttgatgtgagagaaaatctgcatgtagtggatgtggattcacagacaggg
ttacaaacgaagtcaattgatcacaccaagcttatttacagcagctccgcatttaaatct
cttgcaaatggaggaaatgtcagtcaagccctggctgttatcggagagcatgcttgctac
cactcgatggtgcaacacaacggaaaggtttatttccttggggaagagtcagttcttgca
tccaacatcacaacttggagaaagaggatcgacttcgcgttggagagaggacacaaacat
gcacttgatctcgctcttatgttttatgataactctgcaaaggcagttgttggtttacct
gcagatccggaacagcagaagaatttggtctcagatgtgctgttggatgttctggtagaa
tttgttgacctgtccatgaccaagctctgtcctgacagtggaaagttacaagttttgatt
agcttttaccgcaacgttgtaccggtgtgtgtcaaccactgtttgcatattggaagagtt
gacgtgctttttggaagaatatatgaaagatttcgtgttgattgtatagcgcacggtgct
ttccttgaatgtcttgaaccttatataatgaatgataaattacaaaccatcagccctgaa
gtgatgcaggattttgtggctcattaccaagctaaaggtatgcttagcagtgttgagagt
tgccttctgcatttggatgtttccagcttggatttacaccaggtgcttcatttgtgctgg
gctcatgggctttatgatgcaataataagcattcacaaccgtggcatgaaagattatttt
ggtccgttatttgaacttctatccattttacaagctgcgttaagtactggtgccccttta
agtgaaaagatgacaactcttggaaacaagttacttgtatatgtaagctgttgtttagct
ggtgttgcttatccacatggtttgttagatgatgaaacttcaacaagtgtaaagaatcag
atgtttgaaactttgatacatccgagtatcagtgagttaaagactcaccaactctacccc
atcattcatatctttctaagattttccaccaaagaatttcttaatgtcctttcgctgtcc
atttctgagccgcactttcagggaagagaaggtttttctaaagttcaaaactttgttgat
gttctgctccaagtaatgttggaaagtcaaggttttcggcctgatcagattggatgtctg
tttacgttccttgcccgattgtcagctcgacaaaactcacaaattcatttgaatgaaacg
ttgaaacatcaagtattagaatttctcaccactccaagtgaccatgctactgatcatgag
gaaagacaacaagcacttgtggatttactgcagtgtggttttattgaggaatcctacact
ccacgcttggtgcatctagctggacaagcttcattttttagagttttacgttttctacac
acccagcaaagaaaatttgaccttgtgtttgttgcttatgttcaagaccctgcacaaact
gataatacattcacttacgtggaagatgtattgacaagccctcaatatactgagcaggag
aaacagatgctaaaagtaaaagttcttgagcatattaaggacctaatcaacataaatggt
aaaaagtccgtcaaccttgtcactaacttactacaaggaacaattcaaacaattgctgct
aaacttcatgacgaaccttttgtgctctacactttcctacgtggattattcataaacaga
gatgatgaacaaacagatttcattcaagattcatattttgatgatgatgtgacatatgaa
gctccagctgcatcaactgacccagacacatgcgagctttatctatcactgatgtgtcag
ttcggtcgagcagaagtcttacagtttgtacaagattgtgaatactgcaggccacataag
gcactagagatagtaagacgttatcgtgtggacgaagcaactgcctttctacttgagaag
agcggtgacatcagcgctgcttttaacattttacttaacgctgctcatgaaaaaatcaaa
ttgctcagtgaagatgatgaaagtttacatcaagatgatgcaatgtcggcagtagatgat
gtgattcgactttgtcagagaaactcaagaaagttgcaggagaagcagagagagaaactt
tggttttcccttcttgatgttgtgctgaaaccccaacacaacatggatatgagtgaggat
aaggaagtagcaaaacaacttgcccagcgtgtgcttacctccatgattggtcacatgaca
ttacctgctgtactgcagaagattatacaggatccagcttataaaagtggaaagtttggt
gaaataagaaacttgttgttgggaatgttagagacatatcaatatgaacgaacgttgctt
aatacaactcttaacttactaggcagagaccgtcatcgttcattagcaagcttacataag
aatgttgttcatggagtcgctcctaaatcacagttttgtctcatctgtgcaaagtcagtg
ctaaacaatcaacagaaaacagaaaatctgattatctttaggtatggtaatgtttaccat
gaaaattgtctcaataaagaacggagagaaagatcttcaacaaaagtgggaaatgacgtg
agaaattttgaatctaacaagaaaatggaaaactttcgtgatgggttactcatggaaatg
aaaaatcgaaatttaaagcaaacaccatcaactgcaaccaaaagtggtccagatgtttca
gaacagagttttaatcctaaaaactttaaattacgaacaaaagcaccacctattaaattt
tag
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integrated database retrieval system
