Ciona intestinalis (yellow sea squirt): 100183214
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Entry
100183214 CDS
T01056
Name
(RefSeq) N-glycosylase/DNA lyase-like
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100183214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100183214
Enzymes [BR:
cin01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
100183214
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
100183214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
100183214
NCBI-ProteinID:
XP_002131434
Ensembl:
ENSCING00000010918
LinkDB
All DBs
Position
9:complement(3006973..3011671)
Genome browser
AA seq
350 aa
AA seq
DB search
MNMFGRKLDANSETSVLNLKLNLTCGQAFRWRTCENFLIGVMEHRVWQLKQDNDHIYYKV
IACPHWKFNQISEKLKKSSRKRKSTGNVAVNTNKCLDTKRICECSSFEEKILCDYLRLNI
DLKKLYTEWKNRDEKFTHISSSTPGIRVLRQNPLETLFCFLCSVNNNITRIVSMIERMCK
LYGNKLLEYKGTTFHDFPTLGMLASKDTDEDLRKLGFGYRAPFIGKCAKEVMSKGGEVWL
ESLRKQTYKKAFTALTDLTGVGMKVADCVCLMAMDKLEAVPLDTHVRQVALRDYNFKVKT
KTLSTRSYTEMGSFFRSLWGGYAGWAQAVIFVNEIKELPQIYAINEDVVK
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgtttggaagaaaattagatgcgaacagcgagacgagcgttttaaacttgaag
ttgaatttgacctgcggacaggctttcaggtggagaacatgtgagaacttcttgatcggt
gttatggagcacagagtatggcaattaaagcaagataatgatcatatttattataaagtt
atcgcttgtccgcattggaaattcaatcaaatttcagaaaaattaaaaaaatcatctcga
aaacgaaaatccactggaaatgtggcagtaaacacaaacaagtgtttggacacaaaaaga
atttgtgagtgctcttcgtttgaggaaaaaatattgtgtgactacctacgtctaaacatt
gatttaaagaaactttacactgaatggaagaacagagatgagaagtttacacacatttca
tcttcaacccctggtatacgggtgttgcgacaaaacccattggaaactctgttctgtttc
ttatgttcagtcaacaacaatatcacaagaatcgtctccatgattgaaagaatgtgcaag
ctttatggaaacaaacttttagaatataaaggaactacatttcacgactttccaactctt
ggtatgttggcttcaaaagatacagatgaggatctaaggaagctcggctttggctacaga
gctccatttattggtaaatgtgcaaaagaggtcatgagcaaaggaggcgaggtatggttg
gaatcattgaggaaacaaacttataaaaaagcattcactgctctgactgatcttactggg
gttggaatgaaagttgccgactgtgtatgtttaatggcgatggataaactagaagctgta
ccattggacacgcatgtaaggcaagtggcacttcgtgattacaacttcaaggtaaaaacc
aaaaccttgtccacacggtcatatacagagatgggctctttctttaggagcctatggggg
ggatatgctggctgggcacaagcagtaatatttgtcaacgaaatcaaagaacttccacaa
atttacgcaattaatgaagatgttgtgaaataa
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