Ciona intestinalis (yellow sea squirt): 100183265 Help Entry 100183265         CDS       T01056                                  Name (RefSeq) ATP-dependent RNA helicase DHX36   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03018   RNA degradation Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     100183265  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cin03019]     100183265    03012 Translation factors [BR:cin03012]     100183265 Enzymes [BR:cin01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      100183265 Messenger RNA biogenesis [BR:cin03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      100183265 Translation factors [BR:cin03012]  Eukaryotic type   Initiation factors    Initiation associated factors     100183265 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_NTP_bind HA2_C DEAD Helicase_C HA2_N AAA_22 nSTAND3 ATPase AAA_19 T2SSE PhoH NACHT Motif Other DBs NCBI-GeneID:  100183265 NCBI-ProteinID:  XP_002120730 LinkDB All DBs Position 2:4962439..4976057 Genome browser AA seq 983 aa AA seqDB search MHSGYRGRARGSQGGRGSRGRSHGRYNRDSNGSSGANDAAGSGRRGNSRGGNRGGGGDRP PPWLKGRDIGMWYASRSKNQQKSYEKQNCGTVHMNQNQMRDAHQALNDATDTNRPGYEAD DTVPATEQVNGFNITSGFVAPAQDRDRYGWFSDASQNHKMLLNEDLMNDLDKPRSKSHSQ MLEFRKKLPTYKMRKELMDMIKSSQVVVVSGETGCGKTTQLPQFILDDAISSGRGLSCKI VCTQPRRISAISVAERVAKERGEECGGSGSCGYQIRLQAKFPRQQASMLYCTTGILIQWM QSDPSLSSISHIVLDEIHERDLLSDFIITIVKRLLAKRKDLKVILMSATLNADTFSSYFN FCPSINIPGFTYAVQEYYLEEVVKMTKFQPSEDVYYSLKRLQMKYDRLIMRRLDFTEKKK LQEEREDYQKELLAYEVELANKNFSQHDSHAICALDAYLQQKLDFDLIIATVKHIILNPA YSSTGGAMLLFLPGWSDIKQLHQMISNDRFFQPSKFRILPLHSMVPSSNQQQVFDRPPVG VTKIVIATNIAETSITIDDIVHVIDCGKIKIRKFEAGKNISSLNAEWLTRANAKQRKGRA GRVQEGYCYHLFSKLQERKLDDYMVPEILRSPLDQLCLHIKILNLGKLRDFLSEVIEPPP ADSVELSIQKLTAMNALDSNEHLTPLGYHLARFPVEPQIGKMLILATMFSCLDPVLTIAA SLSFKDPFTLPLGKEDEANERKQELSNDANSDHLMLVNMFDGWVAAKRRGAERDYCWRNF LSMSTVKMLSDMREQFKNHLFEAGFLSCQTDLSEANRHSKNIKIIQAIVCAGLYPNVAKL VKMKPHRPPKISTKTERKVAIHPKSVNCDKPSSNFTHQWLCYYEKMKTAEVYLYDTSEVS PYPLLFFGGDISTFQDEDGVNKISVDGWIDFRSESKVAETVKKLRKELDNILERKIREPF STLLHLSSSASVIKSIIDLISCE NT seq 2952 nt NT seq  +upstreamnt  +downstreamnt atgcattctggttacagaggaagagctcgaggttcccaaggaggccgcggctcaagaggc agaagccatggtcggtacaacagagacagcaatggtagttctggtgcaaatgatgctgca ggatcaggccgtcggggaaattctcggggtggcaatcgtggtgggggtggagatagacca cctccatggttaaagggacgagatattggtatgtggtatgccagtaggagcaagaatcag caaaaaagttatgaaaaacaaaattgtggaacagttcatatgaatcaaaatcaaatgcgg gatgcccaccaagcactgaatgatgcaacagatacaaacaggccaggatatgaagccgat gacacggttccagcaacagagcaggtcaatggatttaacatcacgtctggatttgtggcc cctgctcaagatagagacagatatggctggttttctgatgcgtctcaaaaccacaaaatg cttttaaatgaagatttaatgaatgatttggacaaaccgcgctcaaaatcccattcacag atgcttgaatttagaaagaaattaccgacatacaaaatgagaaaggagctgatggacatg attaagtcaagtcaagttgttgtggtcagtggagagactggctgtggaaagactactcag ctgccacaatttattctagatgatgctattagttctggtcgcggtttgtcgtgcaaaatc gtgtgcacccaaccgagaaggatttccgcaatttcggttgcagagagagtggcaaaagag agaggtgaagagtgtggtggtagtggcagttgtggttatcaaatcagactccaagccaaa ttcccacgacaacaagcttccatgttgtattgcacaactggtattttaattcagtggatg cagtctgatccaagcctgtcctcaatctcccatattgttctcgacgaaattcacgaacgg gatttgttgtccgattttatcatcacaattgttaaacgattgcttgccaagagaaaagat ttgaaagttatacttatgagtgctactttgaatgccgatacattttcaagctatttcaac ttctgtccatccatcaacattcctggattcacttatgctgtacaggagtattatcttgaa gaggtcgtaaaaatgacaaagttccagccctctgaggacgtgtattactccctgaagagg ttgcaaatgaagtacgaccgtctcatcatgaggaggttagactttacagagaagaagaaa ctccaggaggagcgcgaagattaccagaaagagttattagcttatgaagttgaacttgcc aacaaaaatttttctcaacatgacagccatgcgatatgtgcactggatgcttacctgcag caaaagctcgattttgacctgataatcgccactgttaagcacataatccttaatcctgca tactcaagtacaggaggagcaatgctattgtttcttccagggtggagcgatataaagcaa ctacatcagatgatcagtaatgacagattttttcaacctagtaaatttcgaatattacct ctgcattccatggtgccatcaagcaaccaacagcaggtgtttgacaggccacctgtcggt gttactaaaatcgttatagcaaccaatattgcagaaacgagcattacaattgatgatatt gtgcacgttattgactgcgggaaaattaaaatccgaaaatttgaagccggtaaaaatatc agctcgcttaatgctgagtggttgacgagggcaaacgctaagcaacgtaaaggaagagct gggagggtacaggaaggctattgctaccacctattcagcaagttgcaagaacggaagtta gatgactacatggtgccagagatattaaggtcacctttggatcaactgtgtctgcatatt aagattctaaaccttggaaaacttcgcgattttctttctgaggtgatcgaaccacccccc gcagattcagtggaactttccatccaaaaactgacagcaatgaacgctcttgactctaat gaacatctgacaccgctcggataccatcttgccaggtttcctgtagagccacaaattggc aagatgctgattttagcaacaatgttttcatgcttggaccccgtgcttacaatcgctgct agcttgagtttcaaagatccttttactctaccacttggtaaggaagatgaagcaaatgag aggaaacaggaattatcgaacgatgcaaacagcgaccatttaatgttggtgaacatgttt gatggctgggtggcagcaaagagaaggggagccgagcgagattattgctggaggaacttc ttgtcaatgtcaactgttaaaatgttaagtgacatgagggaacagttcaagaatcatctt tttgaagctggttttctttcttgtcaaactgatctcagtgaagcaaatcgacattccaag aatataaaaataatacaagcaatagtatgcgctgggttgtatcctaatgtagcaaagctg gtgaaaatgaaaccacatcgaccgccaaagatttcaactaagactgaacgtaaagttgcc attcatccaaagtcagtgaactgtgacaaaccgagtagcaattttacgcatcagtggtta tgttattatgagaagatgaaaacagccgaggtttacctgtacgacacgagtgaagtcagt ccatatcctttacttttctttgggggagatatttctacttttcaagatgaggatggtgtt aataagatttctgtggacggatggatcgatttccgatcggaatctaaagttgcagaaact gttaagaaattaaggaaagagttggacaatatcttggagaggaaaattcgggaaccgttt tcaacgttgctacatctttcatcaagtgcctctgtgataaagtcaattatcgaccttatt tcttgcgaataa

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