Ciona intestinalis (yellow sea squirt): 100183358
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Entry
100183358 CDS
T01056
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100183358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100183358
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100183358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
CSTF1_dimer
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
eIF2A
Beta-prop_SPT8
VID27
Ge1_WD40
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
100183358
NCBI-ProteinID:
XP_002126933
Ensembl:
ENSCING00000003910
LinkDB
All DBs
Position
Unknown
AA seq
434 aa
AA seq
DB search
MDAIKKRERMYRSIIGQLQNDGYMAIAKSLTSQVKPFNPCTSSDFLFKAYSIGLEQVEED
KTDQSYIPNVLESIPPGRGIDLEFENEVQILSPEAVQYETCYVTAHKAPTRAATFSKNGQ
YIATGSVDTSIKVLDVERMLAKSILPSDINNMMEQSSQAGGMADHPVIRTLYDHVDEITC
IEFHPTQQILVSGSRDYTVKVFDFTKSSAKRATKAISEVERVKTLAMHPAGDFILVGTHH
PVIRLYDLETFQCFVSCHPADQHKGPINCISYNQTGNYYASGSKDGEIKIWDGVSSRCIM
KFPDAHDGDDVCSVVFSRNGKYLLTSGKDSVARLWSLAAPTHPVLVYTGAELSGKQTHQA
QAVFNHTEDYVFFPDEQTVSLCCWCARTGERQRLLSLGHQGPARRIAHSPTIAAFITSSE
DFRARFWYKSPLSE
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggacgctattaaaaaaagagagagaatgtatcgctccattattggacagttgcaaaat
gatggttacatggcgattgcaaaatcgttaacatcacaagtaaagccatttaatccatgt
acatcatcagattttctctttaaagcatatagtattggtttggaacaggttgaagaagat
aaaactgatcaatcgtatattcctaatgttcttgaatcaattccacctggacgaggaata
gatttggagtttgaaaacgaagttcagattttatctcctgaagctgttcaatatgagact
tgttatgtcactgcacacaaagcaccaacaagagctgcaacattttctaagaatggtcaa
tatattgcaactggttctgttgatacttcgatcaaagttcttgatgtggaaagaatgctg
gcaaagagtattctgccatcggatataaataatatgatggaacaatcatcacaagccggt
ggaatggctgaccatccagttattcggacactctatgatcatgtggatgagataacttgc
attgagtttcatccaacccaacaaatacttgtgtctggttcaagggattatacagtaaaa
gtttttgattttaccaaaagttcagcaaaacgagcaacaaaagcaatcagtgaagtggag
agagttaaaacattggcgatgcatccagcaggtgattttattttggttggaacacatcat
cctgttattcgactttacgatcttgaaacatttcaatgttttgtaagttgccatccagca
gatcaacacaaggggcctatcaattgtatatcatacaaccaaacaggaaattattatgca
tcaggaagtaaggatggagaaatcaagatttgggatggtgtcagtagtcgctgtatcatg
aagtttccagatgctcatgatggtgacgatgtttgttctgttgttttttcccgtaatggt
aaatatttgttaacaagtggaaaagacagtgtagcacgactatggtcacttgctgcaccg
acccatccagttcttgtatacactggagccgagttaagtggaaagcagacccatcaagct
caagcagtttttaaccacactgaggattatgttttctttccggatgaacaaactgtatcg
ttgtgttgttggtgtgcacggacaggagagagacaacgattattatcacttggtcatcaa
ggtcctgcacggagaattgcacattcaccaactattgcagcttttattacatctagcgaa
gatttccgagcacgattttggtacaagtcacctttatcggagtaa
DBGET
integrated database retrieval system
