Ciona intestinalis (yellow sea squirt): 100183447
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Entry
100183447 CDS
T01056
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100183447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100183447
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
100183447
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
TPR_19
TPR_16
TPR_8
TPR_11
TPR_CcmH_CycH
TPR_12
TPR_6
CFAP70_TPR_C
TPR_17
ARM_TT21_C
ARM_TT21_5th
CFAP70_mid_TPR
ANAPC3
TTC22_N
ARM_TT21
TPR_21
TPR_15
T7SS_EccA1_N
TPR_Psidin_N
ANAPC8
YfiO
CABIN1_N
Motif
Other DBs
NCBI-GeneID:
100183447
NCBI-ProteinID:
XP_009858498
LinkDB
All DBs
Position
4:complement(4546593..4567314)
Genome browser
AA seq
1558 aa
AA seq
DB search
MSTKAIKSSLKAAKSAIQQKEFDEALLHCKAVLREDSGNYNGLVFAGLVYAELGQFENSS
TAYQDAVKSSPNQSLAYQGLINLYTKHKKVKLSAGENDQLVSAYGGIIKLTESSANEAKT
LELYVGLANTLCSLGRAEDSFKTLQKVCNKLNTDKFDVKFEAVYGAVVSTVSIAQDVNIA
GFADLIINCTIYYCKLPAKTDEELDSSLLAMMKCCQKDSTTYDKCLKLLAQCLLSGDITL
TSFLKDLLIQIKLQTEIINTKDDTKSYSSIVSEHLSPYKEVADGYDLYNDMKYEESKGKL
ESALQSADDFIPGWKLLCRVHLVMHQYNAAENIAKSAIQKCKHVQSNHASTWVVQVPMLS
EIKLELTLLLATSMSYSRDQTVVKQAVGTFEKLLKVHPTLEVYHGLNRAAIQCKDWKLAR
STLKELEKKFGASDESKTWIAYLTYQDGDLQTSLLMLKKITEDHPSCISAHLIYGKLMWE
IEEYKVDKTKCFTTFLKAAKLDPYESEAFYYIGLFYQDVIKDSTRAMKCFNKSIALDTFN
EKAGLALADLYIKEENMAAAVEVYNSLSSSSTPGTCKLTWLRLGLCKLKLKETESAIKSF
QAALRADANDHICWECLGEAYMQRGSHGAALKSFQKASELQPGSVFSVHQMAAIKQLLGQ
FTEAIEVYHQVLEMKPDYVPALKGLGESHLSIAHSMLSEGRDLTCVDHVNEALKFFAKAL
CLRPDIACLWSSVGDCLTCIHPLHNTSFTLSIPTTLLGKQLKDCDETKIMGKLEVLQLGE
KFYLHGIRLSKSTATMLYNLGMNYFHQAKSCGDDNKAKLLASKSVEVLKISISHGSKNPI
SWNALGVVCASTYVQNLQLAQHCFITSINLESNNCRAWSNLGMLYLQHNHVEMAHKAFKV
AQSLDPSFCNSWIGQAAIAGMIGSNEAMDLFRHSTELGLHMQAACGYSSRVCNLLYECKD
RSDKNYVENIHKLNGISAAVVQLSKYCQRNPACPHSITMLAYLLEESGLFPLSEKYYYQA
LTLLQSELTDVKTDDKKVDRAKSNYARILYTNGKYSEAISAYKSISQPLHHDLCMLALSL
YMAGKLNDSNNILDQANQMVEDTKQKDLIKLAKAIIFSELKKNKESKKALKELGNCPEAL
EVLCCLEISEKKHADATSVLNELYALLSHDPVAMETYKHFLLSISVKIKPYPKHAVTTLQ
RFIHRFPNQWQLWELLSRLVLTEPTYMHSNIAYIAANRACNLYTSDDGSQARNHHRHDKS
LRQLVDDDFKVKKSLAYSVLACGKHDPSQGSHLKVDALKAAQRLVHSHPNTVESWSILGS
VCHARTIYSKVKSGVGLLNDECKRISNFVSNQSSNKLHEWAIKQNMLSSIIDHDHDAVTD
LASKITLNFEESDVFVTLSECDVAHHRLQAIQGHVIDELDNVAVSQSSSLVSKKLIAGAY
QKLGMYEKAYNVFCNMLKLKLNKLERFNLLIRVAHIGLVAAAIDSDVTKWVNIASDAVNE
AVGLNRDSPVAQLLEGLCHRMSKNKKKMKSAFDRLISSESCHPMCESQVIAESCLALN
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaagcaattaaatcatctttaaaggctgctaaatcagcaattcaacaaaag
gaattcgatgaagctttactacattgtaaggctgtattaagagaagattctggtaactac
aatggtcttgtttttgctggtttggtttacgctgaactcgggcaatttgaaaattcttca
actgcctaccaagatgcagttaagtcatcaccaaaccagtcgttagcataccaaggcctt
ataaacctgtatactaagcataagaaagttaaactatctgctggggaaaatgatcaactg
gtttctgcctatgggggaattattaagttaactgaaagttcagcaaatgaagccaaaact
ttagaactatatgttgggttggcaaatacattgtgttcgctgggccgtgcagaagactct
ttcaagacactgcaaaaagtttgcaacaaactaaatactgacaaatttgatgtcaaattt
gaggcagtttatggagcagttgtatcaactgttagtattgctcaagatgttaatattgct
ggattcgctgacctgattatcaattgcacaatttactactgcaaattaccagcaaaaact
gatgaagaactcgactcttccctcttagctatgatgaagtgttgtcagaaagattcaaca
acttatgataagtgtttgaagctgctggctcagtgtttattatctggggatatcactctg
acaagttttttgaaagatttgctaattcaaattaaactacaaacagaaattattaacaca
aaagatgacactaaatcatattcaagcattgtatctgaacacctaagcccatacaaagaa
gtggctgacggctatgacttgtacaatgatatgaaatatgaggaaagcaagggtaaactt
gaatcagcattgcagtcagcagatgattttataccaggatggaagttgttgtgtagagtt
caccttgtaatgcaccaatacaatgcagctgaaaatattgctaaatctgccatacaaaag
tgtaagcatgtacaaagtaaccatgcttctacatgggttgtccaagttcctatgttaagt
gagatcaaactagaactaactcttctgcttgcaacttccatgtcttattctcgagaccaa
acagttgtgaaacaagctgttggaacatttgaaaagttattgaaagtccaccccacatta
gaagtttaccacgggctgaacagggcagctatacaatgtaaggattggaaacttgctaga
tcaaccttaaaagagttggagaaaaagtttggtgcaagtgatgaaagtaaaacatggatt
gcatatcttacttatcaggatggtgatttgcaaacctccttgttgatgttgaagaagata
acagaagatcatccttcttgcatcagcgcacatcttatatatggaaagttgatgtgggag
attgaggaatataaagttgataaaactaaatgttttacaacttttctgaaggcagccaag
cttgatccatatgaaagtgaagcattttattacattggacttttctaccaagatgtgata
aaagattcaactcgtgccatgaaatgcttcaacaaatctatagctctggatacatttaat
gagaaggcaggtctggcacttgcagacctttatatcaaggaagagaacatggcagctgca
gttgaagtttacaattcactttcatcatcatcaacacctggtacttgcaagttaacttgg
cttagattggggttgtgtaaacttaaattaaaagaaacagaatctgctatcaaaagtttt
caagctgcactgagagcagatgcaaatgaccatatttgctgggagtgccttggtgaagca
tacatgcagagaggcagccatggtgctgcgttgaaatctttccaaaaagcttcagaactt
caacctggatcagtgttcagtgtacatcagatggcagctattaaacagttgcttggtcaa
ttcactgaagccattgaagtctatcatcaagttttggaaatgaaacctgattatgttcca
gccctgaagggtttgggtgagagccatctatccattgctcactccatgttaagtgaagga
cgtgatttaacttgcgtggatcacgttaatgaagctttgaagttttttgctaaagcttta
tgcttgagacctgacatagcttgcttgtggagttcagttggtgattgtttgacttgcatt
catccattacataacactagctttactttgtccattcctacaacgttgttgggtaaacaa
ttgaaagattgtgatgaaacaaagataatgggaaagttggaggtattacaacttggtgaa
aagttttatcttcatggaatccgcttatccaagtctactgctaccatgttgtataacttg
ggaatgaactatttccaccaagctaagagttgtggagatgacaataaagccaaacttctt
gcttccaaatctgttgaagttctaaaaatctcaatatctcatggatctaaaaaccccatc
tcatggaatgcattgggtgtggtgtgtgcttctacctatgtacagaacctccaacttgcc
cagcattgcttcattacttccatcaatcttgaatcaaacaactgccgggcttggagtaac
ttaggtatgttgtacttgcaacataaccatgtggagatggcacacaaagctttcaaggtt
gcgcaaagtttggatccttcattttgtaactcatggataggacaggcagcaatagctggt
atgattggcagcaatgaggcaatggacttgttccgacacagtacagaacttggtctgcat
atgcaggctgcatgtggttacagttcaagagtttgcaaccttctatatgaatgcaaagac
agatctgataaaaattatgttgaaaacattcataaattgaatgggatatctgctgctgtt
gttcaactgtcaaaatactgccaaagaaatccagcatgcccacactcaatcacaatgttg
gcatacctgcttgaagagtcagggttattccccttatccgagaaatattactaccaagcg
ttaacattgttgcaatctgagttgacagatgttaaaacagatgacaagaaggtggataga
gctaaatctaattatgcgaggatattatatacgaatggtaaatacagtgaagcaatatca
gcatacaagagtatttcacaaccattacatcatgatctatgtatgttagcattgtctcta
tatatggcaggaaaactaaatgattctaacaatatattggaccaggccaaccaaatggta
gaagacacaaaacagaaagatcttataaagttggctaaagcgattatttttagcgagttg
aaaaaaaataaagaatcaaagaaagcattgaaagaacttggaaattgtccggaagcatta
gaggttttatgctgtttagaaatctctgagaagaaacatgcagatgctacttctgtatta
aatgaactttatgcattattatcacatgatccggttgccatggaaacttacaaacacttc
ctgttgtcaatcagtgtgaaaataaaaccttacccaaaacatgctgtaactactttacaa
cgctttatacataggtttccaaaccagtggcaactatgggagcttttgtctcgtttagtg
cttacagaacctacatacatgcattcaaacatagcttatatagctgcaaaccgtgcatgt
aatttatatacaagtgatgatggaagccaagcaaggaatcaccatagacatgataaaagt
ttgagacaattggtcgatgatgattttaaagttaagaaatcattggcatattcagtgtta
gcatgtgggaagcatgacccaagtcaaggatctcatcttaaagtagatgctctcaaggcc
gcacaaagacttgtgcacagtcatccaaatactgttgagtcatggtcaatacttggttca
gtgtgccatgccaggactatttattcaaaggtaaaatctggagtgggtttgttaaatgat
gaatgcaaaagaatttcaaactttgtgtccaatcagagttcaaataagcttcatgaatgg
gcgatcaagcagaacatgttgtcaagtatcattgaccatgatcatgatgctgtgaccgac
cttgcttcaaagattactttaaacttcgaagagtctgatgtgtttgttacgcttagcgag
tgcgatgtcgcacaccaccgcttacaagccatccaaggtcatgtgattgatgaactggat
aatgttgctgtgtcacaatcatcgtctttagtcagcaaaaagttaatcgccggcgcctat
caaaagttgggaatgtatgagaaagcatacaatgtgttttgcaacatgttgaagttaaaa
ttgaacaaacttgaacgtttcaacttgttgatacgtgttgctcacatcgggttggttgcc
gcagcaattgatagtgatgtcacaaagtgggttaacatcgcaagtgatgcagtgaatgaa
gctgttgggttgaatcgggattcccctgttgcgcaactgttggagggcctgtgccataga
atgagtaaaaataaaaagaaaatgaagtctgcatttgatcgattgatttctagtgaatct
tgtcacccaatgtgtgaatcgcaagtcatagctgaatcatgtcttgctttgaattga
DBGET
integrated database retrieval system
