Ciona intestinalis (yellow sea squirt): 100183462
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Entry
100183462 CDS
T01056
Name
(RefSeq) eukaryotic translation initiation factor 4B
KO
K03258
translation initiation factor 4B
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
100183462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100183462
03012 Translation factors [BR:
cin03012
]
100183462
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100183462
mRNA cycle factors
Stress granule specific factors
100183462
Translation factors [BR:
cin03012
]
Eukaryotic type
Initiation factors
eIF-4
100183462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
100183462
NCBI-ProteinID:
XP_018667638
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All DBs
Position
5:418247..426703
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AA seq
689 aa
AA seq
DB search
MATPTAAGKKGKKKAKNTKTLSLNDFLGDTPGASPGVIKPTLDWADEADQEFRSMSTSMP
YQNNSNKNKLIQLPTAPRSSRSVEIDTSRIPDSGPYTAYVGNLPYDADEFVLQEFFKDIP
MTNVRLQEENGRFRGYGYVQFPDKQSLIQALQMNDETLQKRVIRVDIADNQNKEGKGRGD
RYGSLSGDPDRLEGNWRRTSNDHLNGGPGSNRGEDSRWGGRGYEQNDRGSRFGRDRYGGG
RDGRYESSFSRGGESEQWMQRREPPKERPRLNLKPREKPLNPEAATTRSSSIFGSAKPVD
TAARERMVEEKLLKQEQSLAADKPDSVAPQKKSQNIFGSAKPVDTAAREREMEQKIAEQE
KQILEKAQQPKPAPPTPTRPSIFGNAKPVDTSAREREIEKKIRIQEQEMTPEPQDSGIHR
EVRYYPRRLSERSDEMSITSPKRRSRTSSTRSSDDHDTHVHHPPPISSEPRKPQYKPAPA
PKQSAWGGKEPISVALGSTARSDARGEREEAEGNCKDDVEERTPEGAADDDVRSRATPGD
GRESNPRYRPSQLSGRNQQDQFKSRQGGRGDAARHRSGEGWNSVENRRRGDGVSDNPRRR
GNHGNHGNRGGANQPRPMQKNKKDEKTQKKRDPSWDSSPECDRPDGEEENDEKVPVKPSL
VGKEETVDFVVESKFALLAVDSGDDDVED
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccaacagctgcaggaaagaaaggcaagaaaaaggcgaagaacactaaaact
ttatctttgaacgactttcttggtgacacacctggggcttcccctggtgtgatcaaacca
accttggattgggcggatgaagccgaccaagagtttcgatcaatgagcacatcgatgccg
tatcagaataattcaaacaagaacaaattaattcaacttcccactgctccacgatcatca
agatcagttgaaattgacacaagcaggattcctgacagtggtccttacactgcctatgtt
gggaatctgccatatgatgcagatgaatttgttctgcaagaatttttcaaagatatacct
atgacgaacgtaagactgcaagaggagaacggcaggtttagaggttatggctacgtacag
ttccctgataaacagtctttgatccaggctttgcaaatgaacgacgaaactcttcaaaag
cgagttattcgtgttgatattgctgacaatcagaataaagagggaaaaggaagaggggat
cggtatggaagcttaagtggtgatccggatcgcttggagggaaattggagaagaacttcc
aatgatcatctaaatggaggtccaggttccaatagaggtgaggatagcagatggggaggt
cgaggttatgaacagaacgaccgtggttcccgttttggtcgggatagatatggaggtggt
cgtgatggaagatatgaatcaagttttagcagaggaggtgaatcggagcaatggatgcaa
cgtagggagccaccgaaagaaagacctcgactcaatcttaaacctcgtgaaaaacctctc
aaccctgaagctgctacaacaagatcttcctcaatatttggatccgctaaacctgttgat
acggctgctcgtgaaagaatggtggaagaaaagttactgaaacaggaacaaagcctagct
gctgacaagccagacagtgttgcaccacagaagaaatcacaaaatatctttggatcggca
aaaccagttgacactgctgcccgtgaaagagagatggaacaaaaaattgcagaacaggaa
aaacaaattcttgaaaaggctcaacaaccaaagccagccccgcccaccccaacacgacct
tccatatttggtaatgctaaaccagttgacacctcggctcgtgagcgagaaattgaaaag
aaaataagaatccaggagcaggagatgacaccagaaccacaggacagtggcattcataga
gaggtacgttattatcctcgaagattgagtgaaagatcagatgaaatgagtataacttca
ccaaaaagaagatccagaacatcttcaacaagatcttctgatgaccacgacacacacgtg
caccatccaccaccaatcagcagtgaaccacgaaagccacaatataaacctgcaccagct
cctaaacaaagtgcttggggaggcaaggaacccatatctgttgctcttggatccaccgca
agatctgatgcacgaggcgagcgagaagaagcagaaggaaattgtaaagatgatgttgaa
gaaaggactcctgaaggagcagcggatgatgatgttcgctcacgagcgacacccggtgat
ggaagggagagtaatcctcgttatcgaccatcacagttatcggggaggaatcaacaagat
caatttaaatcaaggcaaggaggaagaggtgatgcagctcgacacagatcaggagaagga
tggaacagtgtggagaatcggaggcggggggatggagtgagtgataatcctcgaagaaga
ggtaaccatggtaaccatggtaacaggggtggagccaaccagcctcgaccaatgcagaaa
aataaaaaagatgaaaagactcaaaagaaacgtgatccaagttgggattccagtcctgaa
tgtgatcgtcctgatggagaagaagaaaatgatgaaaaagttcctgtcaaaccatcattg
gtgggaaaggaagaaacagttgattttgttgtggaaagtaaatttgctttgctggcagtg
gacagtggtgatgatgatgttgaagattag
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