Ciona intestinalis (yellow sea squirt): 100183656
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Entry
100183656 CDS
T01056
Name
(RefSeq) dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
100183656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100183656
Membrane trafficking [BR:
cin04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
100183656
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
100183656
RAVE complex
100183656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_HPS5
WDR55
Beta-prop_IFT140_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
DUF6639
Motif
Other DBs
NCBI-GeneID:
100183656
NCBI-ProteinID:
XP_018667436
LinkDB
All DBs
Position
5:2354254..2363364
Genome browser
AA seq
2774 aa
AA seq
DB search
MKQHQVLTGSSNPGNHCYDIGQISNFTFFAYGSGCDVVISSSSKHPLQILTYKDDVVVSA
LSCSENNGYIAVAYAHNIVLYWPQRNSINHTYTWSQKSSFVLDENEGHAKILSWNYDGSQ
LLTGSSMISLWKSSSDDEDEEGSSSWSCAWKSGSEEHPIELSFSPTNSASQLFASVTDGD
CMIKVWFPHRKKDNRDIDFTFTYLLHPQPVVGFEWRKNFVSGRFEIFSNVLISSSRDQIC
RIWCETKSPTSQLLKFQSKQPTHQSKMGQNLNQPRQVMKAATAPAMSSLTPTPTSSSGKR
VSENRHFHLAASINPLSDIPLLPSAGEQRLNSNNDTQVTTFTIHWLNNKFHQSRVLQNQL
LQQVISSHNILEEEGLTMSSSDSSLYLNAPEVIEKLVYDWIESRDALFSIHPADGSLLVW
HIDWLDENRPGRIRQPQVCFSSRIPMAFSSGDAATLCPNVILFVNFSTQQNLLHSASCFS
LNPQQNSADVSTPDIVYTDVQLLSKHTDGSLNLWQVSFSDENDFSSIMSIYHITRICGHC
FHLSGILSHPILPLLLTTASHQVASPLKPSEESDLILWRVDPVGPLSFCGGLSELTRISN
DQHSFTHVSWFPVLFPAWCLGRTNNSPSTALIAIGKDFINIYQALVDADAILTEINAAQT
ISTEKPAKRNLVSQQSSAHPGCLLHLLNLQEKVTNGGNMLLLETFPDSAMCGSETTKTRN
CHFQKSFFIVIVEQNEQAVIHTWKVTFKASLSSVKELRSRRTTVRMSDSSDDDSVEDDVE
DESTSFSFIDVSLDKISSENIQLPHPSAKVLSACSGTGRFGLLLDPKQKTNVYNSPFHVC
TACDDDNIYFWCYSATPNPVTGHHWNIWSADNSPGGSVRVEGRPIIIKAANPTLLACLHN
NLDGNFMVTVYECASSGGSNWMEQDRIQYDVEDACKEEEFHLDWLSREEGSFFLAVGYAR
NIKIYSLSPNDIKGKSKKEKQSSNSFSPISRQVSLDAHTRQKLFASSKLKSAEMSIEEFN
VGRTSQDNDRVNWRLLRWRLLKDLNVSSNNVTFSHSKYSSVVSWARDGILVVATQTEMYV
FCPWMEQDKQSTKSDMMSLSEIADKACPTLPQYHPLVLSELMNSGHMAVVREILINLAIC
INGEFHDTVCQSEVLQVEKYHFADSMINTSRLCTTGNNITPLALNSLLADSGHLQSNFTK
KEESSSDPVGEAQKNVVETLDDLETLDDLQMDEESDEELNDILGIKSSKKRNKTSREQVD
LASLEPNYFGKEHCKVIHEFLVRNQLPGLSSLDQMELMALADTLEMTNASNLHSNSPSNE
DEVSGHGFRAGERGYAVSGGGGGSLDNCGLQYVMALHNHLCLLNSLPSVNRAVLLKQGLD
SCHFAWAFHSEAEDEMLSMLPSVHRGSPEWKELKSLGVGWWIRSNVLLRRLIEQTARAAF
LKNNDPLDSALFYLALQKKAVLCGLFKSVKDTRMYGFFQNNFREERWRVAALKNAFALMG
KQRFQQAAAFFLLSGSVHDAVEVCIEKLKDIQLALVIARMHPTNTVSEEKLLLNHVLGEN
DSSHTVNTTTSDSFLRSMSYWILGRYKESVTTLVENVRQEDITDIFNFYMFLRNHPIVQR
SRAVEAASSPTTNQPNISENERGLIFQTAVVHLEAGCPVLTLDSLSNLPNKEIKSASPDV
VTPVKEEVQEVPDWSAPVDLGDDGGLDLYWSEDDDDDMSDKNDPDVPTITIQPCSPPQGV
PHQDNEQVELAAFSQDIFANHLRMTACLKIFVQELQAIANAYNMDGGQLRSKLYMWLENA
SKVMNRIFGSQEHDSPGMQQVGPLHHGSSSDEEASNSIESMSNRASGLSLAPSLHELILA
DNQDWKSRRSALTRRHKWLQRNHNFIRTLLSYCNLHDSAFGSLAALRMELLLLLQESLQD
QTSPRHLASPLPLPSANIPLISSIASSCKSVIADPLTHLCHMTHDILRAILHFVQAPHPT
DNSQSYTSTMLCCQAAALSSCIYQSLCDTSSSSYRSKLFKVDTSMEDSHPPRNQAPDVLT
YIPPTTAPSQWPGVPLLQSLLNSQASSGENRTKIIVLLTEATASVYISLVIHALRTHNAS
LLYRLTNHNLGTKMWNAVFGGGVRQLITYSTPHTNPEVPTKSVQKMRDRLNSKVLLTMKR
LSIGSSGHQSSSTKEKFVPPEISLWDWFLTKPFTSLSNDAINFDSDADVEEEEEEESDTY
SALSDPIDDVAASDQLDPDSYSWKILRLVIVQTVIKSLKGFLSLAGLDINEISANSSLLA
ATLRILQDWLSEAYCALEESSGPPTDFLPSFQNSDSNFGGPRPAMLRYQAMLEPNNTPFH
PATSKTTGLIRLWHSLVKKEELQETFIKYIYLRKNKTEEDTSDTGDEFSTHGSSFSQKVK
ILHKEPDIVTAFCMNSVNKNCIALSSSKEVIELDLSMLLASDAWAWVEEASTPMERTSSV
KDDEEFLFVSTPKPGKTHPVMYPQSAQVSIPWQTKSLTGQGANVLLKRARATVRRLESHP
TLPYYLTGSADGSLCMWEWGHQHRISQYRAAGQFAKVSSVHFNLLGNKLSLVDGEGFLTL
WQVSSPQKSFFHHLVHDRGASDCCFLSSASVIATAGLSTSHRNVAIWDTLMPKRSMLVKD
FLVHEQTGSYCLKYLPRYRSILVGGKNGVVAAFDDRSMNEPLAKFIAHDSAIKCLSVDPH
ERIYATGSTSGDVKIWDATSNQLLSACPNEHTRSSLFRNFGFGTVQISLTDDQIFTCGAD
GSLKMKILPKFKLR
NT seq
8325 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcaccaagtcttgactggatcatcgaatcctggcaaccactgttacgacatt
ggacagatttccaacttcacattttttgcatatgggtccggatgcgatgtagtcatttct
tcctcatccaaacatcctctgcagattcttacttacaaagatgatgtagtggtgagtgct
ctctcatgtagtgagaacaatggctacattgcagttgcttacgcacataatattgtactg
tattggccgcaaagaaattcaatcaatcatacttacacatggagtcaaaaatcttctttt
gttctcgatgaaaatgaaggccatgcgaagattctgtcatggaattacgatggctcccaa
cttttaactggatcatcaatgattagtttgtggaagtcctccagtgatgatgaagatgaa
gaaggatcatcctcttggagttgtgcatggaagagtgggagcgaggagcatccgatcgaa
ctctcattctctccaactaactctgcaagccagctgtttgcttccgtgaccgatggagat
tgcatgatcaaagtctggtttccgcaccgaaaaaaagataacagggacattgactttact
ttcacataccttctacacccacaaccagttgtcggctttgaatggagaaagaattttgtt
tccggaagatttgaaatattttccaatgttctcatcagttcatcaagagaccagatatgt
agaatctggtgtgagactaaatcgcccacttcacagttgctgaaattccaatcaaaacaa
cccacccatcaatctaaaatgggtcaaaacctcaatcaacctagacaagtgatgaaagca
gctacggcacctgccatgtcttcactcacaccaactccaaccagttcaagcgggaaaaga
gtttcagaaaaccgtcatttccatcttgctgcttccatcaaccctctttccgatattcct
ttgttaccttcagcaggagagcagcgactaaattcgaacaacgacacacaagtcactacg
tttactatacactggctaaacaataaattccaccaaagcagagttcttcaaaaccagctt
ttacagcaagtaatttcgtcccataatatcttagaagaggaaggccttaccatgagttca
agtgacagctctctatacttaaatgcaccagaagttatcgaaaagttagtttacgactgg
attgagtccagagatgctctcttctccattcaccctgcagatggttcactactggtgtgg
catattgattggttagatgaaaaccgacctggtagaatcagacagcctcaagtttgtttt
tcgtcaagaatcccaatggcattttctagtggagatgctgctactctgtgccctaatgtt
atcctctttgtaaacttttccacccagcaaaatcttcttcactctgccagctgcttcagt
ttaaaccctcaacagaattctgctgatgtcagcacgcctgacatagtgtacacagatgtt
caactgctaagcaagcacactgatgggagtctaaacttgtggcaagtttccttcagcgac
gagaatgatttctcatccatcatgagcatctaccacatcacgcgtatatgcggacattgt
ttccatctatcagggattctctcgcatcccatactccctcttcttctcacaacagcctca
catcaagtggcaagtcctctaaaaccatcggaggaaagcgatcttatcttatggagagtt
gaccctgtggggcctttgtcattttgcggaggtctctcagagctgacaagaattagcaac
gaccagcacagcttcacacatgtgtcttggttccctgttctgttccctgcctggtgttta
ggtcgtaccaacaactcccccagcacagctttaatagctattggcaaagactttatcaat
atataccaagcgctagttgatgctgatgcgattttaacagaaatcaatgcagctcaaaca
atttcgacagagaaacctgcaaaacggaacctggtctcacaacaatcttctgcccatcca
ggctgtcttctgcatctgcttaatttgcaagagaaagtaacaaatggaggaaacatgctt
cttcttgaaacctttcccgacagtgcaatgtgtggatcggaaacaacaaaaaccagaaac
tgtcattttcaaaaatcattcttcattgtcatagttgaacaaaatgaacaagctgttatc
catacatggaaagtcacattcaaggcaagtttatcctcagttaaagaattaagaagcaga
agaaccactgttcggatgtcggactcttctgatgatgacagtgtagaagatgatgtggaa
gatgaatcaacctctttctcattcatagatgtttctttggacaaaatctcaagtgaaaac
attcagctaccccacccctctgcaaaagttctgagtgcttgttctggtactggaagattt
ggtttgttgctagatccgaaacagaagactaatgtttataattctcccttccatgtatgc
actgcatgtgatgatgataatatttacttttggtgctactctgctacccctaatcctgtg
acaggtcaccattggaatatatggagtgctgacaactcccctggtggtagcgtgagggtt
gaaggtaggcctatcattatcaaggctgcaaatcctacactgctagcttgcctgcataat
aatttagatggtaatttcatggtgactgtttatgaatgtgcatccagtggcggttcaaac
tggatggaacaggatcgaatccagtatgatgttgaggatgcatgtaaagaagaagaattc
catcttgactggttgtcaagggaagaaggctcattttttcttgcagttggttacgcaaga
aatattaaaatctattcactctcccccaatgacatcaaaggaaaatcgaaaaaggagaaa
caatcttcaaactcattttcaccaatttcgcgacaagtttcattagacgcacacaccaga
caaaagctgtttgcttcatccaagttgaaatcggcagaaatgtcaattgaggagtttaat
gttggccggacttctcaagataatgatcgtgtcaattggaggctattgcgctggcggtta
cttaaggatttaaatgtctcttccaacaatgttacatttagtcattcgaaatattcttca
gtagtttcctgggcaagagatgggattctggtagttgcgacgcaaactgaaatgtacgtc
ttctgcccttggatggaacaggataaacagtccacaaaaagtgatatgatgagtttatct
gaaattgctgacaaagcttgtccaactttgccacagtatcatcctttagtgctgtccgag
cttatgaacagtgggcatatggcagtggttagagaaattcttataaaccttgcaatttgc
attaatggggaatttcatgacactgtgtgtcaatcagaagtactgcaagttgaaaagtat
cactttgctgatagcatgattaatacatcaaggctctgtacaacaggaaataacatcaca
cctctggcactgaactctcttctggcggacagtggtcacctgcagtcaaacttcactaaa
aaagaagaaagttcttctgatccagttggagaagcccaaaaaaatgtagtggaaacactg
gacgatctggaaacactggatgacttgcagatggatgaagagtctgatgaggagctaaat
gatatccttggaattaaatcatccaaaaaaagaaacaagacttcaagggagcaggttgat
cttgccagtctggagccaaactattttggaaaagagcattgcaaagtaattcatgagttt
cttgtcaggaaccagttacctggccttagtagcttagatcaaatggagttaatggccttg
gctgatacattagagatgacaaacgcttcgaatcttcattctaactcaccaagtaatgaa
gatgaggtttctggacatggtttccgagcaggggaaagagggtatgcagtgtctggaggt
ggcggtggttccttagataactgtggtctgcaatatgttatggccctgcataaccaccta
tgtctactcaattcacttccttcggtgaatagagcagtcttgttaaaacaaggtttagat
tcatgtcattttgcatgggcttttcactcagaggcagaagatgagatgttgtctatgtta
ccgagtgttcacagaggttctccggagtggaaagaactaaagtctctcggagtaggatgg
tggattcgttccaatgtcctcttaaggaggttgattgaacagacagccagagctgctttt
ctgaagaataacgacccattggattctgctctattctatcttgcattgcaaaagaaagct
gtgctgtgtggtttgtttaagtcagttaaagacaccagaatgtatggattttttcagaat
aacttccgagaagagcgttggcgtgtagctgcgttaaaaaatgcattcgctcttatggga
aagcagagatttcagcaagcagctgcatttttcctactatctggctccgtacacgatgca
gttgaagtctgcattgagaaactgaaggatatacaacttgcgcttgtcatcgcgcgaatg
catcctaccaatactgtgagtgaagaaaaactgttgttgaatcatgtccttggtgaaaat
gattcctcccacactgtcaatacaacgacttctgattcatttcttcgaagtatgtcatac
tggatacttggtcgctacaaggaatcggtcacaacattggtcgaaaatgttcgtcaagaa
gacattacagatatattcaatttttacatgttcttaagaaatcaccccatagtccagcgc
agtcgagctgttgaagcagcttcaagtccaactacaaatcaacccaatatatcagaaaat
gagcgtggacttattttccaaactgctgtagttcacctcgaggcaggatgccctgtgtta
acacttgattcactctccaatcttccaaacaaggagataaaatctgcatctccggatgtt
gttactcctgtgaaagaagaagttcaggaggttccggactggagtgctcctgtggatctt
ggtgatgatggaggcttggatctctattggagtgaggatgatgacgatgatatgtcagat
aaaaacgatcccgatgttccaacaattaccatccagccctgttcccctccacaaggggtt
cctcaccaagataatgaacaagttgaactcgctgcattttctcaagacatattcgccaat
caccttcgcatgactgcttgtttaaaaatattcgttcaagagcttcaagccatcgccaat
gcttataacatggatggcggacaactacgctccaaactttacatgtggttggaaaatgct
tcaaaagtgatgaataggatttttgggagccaggagcatgattcacctgggatgcagcaa
gttggtcctctgcatcacggatcatcctcagatgaagaagcatcaaactctattgagagc
atgagcaatcgcgcatccggattaagtttagctccatctttgcatgagctgatcctcgct
gataaccaagattggaaatcccgccgaagtgctttgacccgaaggcataagtggcttcag
cgcaaccacaactttataaggacgctcctctcatactgcaacctgcacgactctgctttt
ggctcattagcagctctaaggatggagctcctgcttcttcttcaggagtctttacaagat
caaacctccccacgacacctggcatctcctcttccacttccgagcgccaacatccctctc
atcagttccattgcatcttcctgcaaatctgtgatcgctgaccctcttacccatctctgt
cacatgacgcacgatattctaagagcaatccttcactttgtccaagccccacacccaact
gacaacagccagtcatacacaagtacaatgctttgctgccaagctgctgctttatcatca
tgcatttatcaaagcctgtgtgatactagttcctccagctacagatctaagctgtttaaa
gtcgatacatcaatggaagattctcatcctcctcggaaccaggctcctgatgtccttacc
tacatccctccaacaacagctccatctcaatggccaggagttcctcttcttcaatcgctc
ctcaactctcaagcatcttccggagaaaaccgaaccaagatcatagttcttctcacggaa
gctacggcatcagtttacatcagtcttgtaatccatgctttgagaacacacaacgcatcc
ttgttatacagactcacaaaccacaacttaggtacaaaaatgtggaatgccgtttttgga
ggtggcgtgcgacaactgatcacttactctactcctcatacaaatccagaggttcccacg
aaaagtgtgcaaaaaatgagagatcgtctcaacagcaaagtccttctcacaatgaagaga
cttagtatcgggtcctccggacatcaatcctcctccacgaaggaaaagtttgttcctcca
gagattagtttatgggattggtttctcactaaaccgttcaccagcctcagtaacgatgcg
ataaacttcgattctgatgcagatgttgaggaagaggaagaagaagagtcagacacatac
tctgcacttagtgacccaattgatgatgttgctgcttcggatcaattagatcctgattca
tacagctggaaaatcctacgtttagtgatcgtgcaaactgtaatcaaaagtctgaaagga
tttctttcacttgctggtcttgatattaatgaaataagtgcaaattcatccctacttgct
gccacactaagaattctgcaggattggctgtcagaagcttactgtgccctagaagaatct
tcaggcccaccgacagactttcttccgtcatttcaaaacagcgactcaaactttggtggg
cctcgacctgctatgctacgctaccaagctatgcttgaacctaacaacacaccgtttcat
ccagctacaagtaagaccacaggtttgattcgtctatggcacagcctagtaaaaaaggaa
gagttgcaagagacatttattaaatacatttacttgaggaagaacaagactgaagaggat
acttctgatactggagacgagttttccacccatgggtcttcattcagccaaaaagtgaag
attctccacaaagaaccggatatagtgacagctttttgcatgaacagtgtcaacaaaaac
tgcatcgctctctcctccagcaaagaagtcattgagcttgatctttcgatgctcctcgca
tccgatgcatgggcgtgggtggaagaggcctccacacctatggagaggacaagttctgta
aaagatgatgaagaattcctcttcgtttcaacaccaaaacctggcaagacgcatccagtg
atgtacccacaaagcgcgcaagtctctatcccatggcaaactaaatctctaacaggccaa
ggagcaaatgtgctgttaaagcgtgcaagagctactgttcgtcgtctcgaatcacaccca
actctcccatactacctcacaggcagtgctgatggcagtttatgtatgtgggaatggggc
caccagcaccgcatctcacagtacagagctgcggggcaatttgccaaggtttcttccgtc
catttcaacttactcggcaacaaactaagcttagtagatggggaaggtttcctaactctc
tggcaagtgagttcgccccagaaatcgtttttccatcacctggttcatgacagaggtgca
agtgactgttgtttcttatcatctgcaagtgtgatagcaactgctggcctctccacctct
caccgtaatgttgcaatctgggatactttgatgccaaaacgaagcatgcttgtgaaagat
tttctcgttcacgagcaaactggttcgtactgtctgaaatatcttcctcgatatcggtcg
attcttgttgggggaaaaaacggggttgtggctgcatttgatgatcgtagtatgaatgaa
ccattggcaaaatttatagctcacgactccgctataaaatgcttatccgtggacccccat
gagcgtatatatgctactggatctaccagcggtgacgttaaaatttgggatgcaacatca
aaccagttgttgagtgcatgccccaacgaacacacacgctcgtcgctgttcaggaatttt
ggtttcgggaccgtccaaatttcgctgacagacgaccagattttcacatgcggtgcagac
ggttcattaaaaatgaaaatattaccaaagttcaaattacgataa
DBGET
integrated database retrieval system
