Ciona intestinalis (yellow sea squirt): 100183663
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Entry
100183663 CDS
T01056
Name
(RefSeq) neuronal PAS domain-containing protein 4-like isoform X1
KO
K26457
neuronal PAS domain-containing protein 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100183663
Transcription factors [BR:
cin03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100183663
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
bHLH_NPAS4
PAS_11
PAS_9
PAS
PAS_4
HLH
Bag6_BAGS
CoV_NSP10
Motif
Other DBs
NCBI-GeneID:
100183663
NCBI-ProteinID:
XP_002123352
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Position
11
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AA seq
885 aa
AA seq
DB search
MAPNGKPASFVMQRQRSPLQPVVESVTSKDHIRVKNECILFSQSIMSGRWNPSTNVHAAE
STPTNLEGPEPRILSKKRRDLINAEIRELQNLLPLKKSARERLSYLGILALTNTFIRKAT
FFKKECISCDASMSSGLVSEFTSSLCGFLLVFNREGKILYSSENILDYLGNTVVELASQG
DSIYDFVDKEDHDQVRAQLEVPPHDDRGEARKLSFFCRMATSRYMKTQMRSWKNKIIHVT
GKYHRPEMSNDWSDTVFVAVCTPIESKPVTDVRHHPSPRACEFKAVHGPDMKFLEVPNTV
ESLLGYKPDELENTSWYDWIYPEDLGQARQQHLKFVKEDGSAFACVLRMIRKDGSAVWMD
ITAEKSQESIGNSFICNYIVIDEEEVPYFRIHHNLLPFPEHYTDSQRQYLAYRSTLLSAA
LSNDANSAGTSPLTSPTSISQHDLASAHIGHPMYGDNLDTKSILRRQLIKRKMSSLDSPL
CSPQGSYPGDMFSVPPNKMLIRTASEINYTNTPYHVPLHHSTSYPEASYHSHVAYRQAPE
DSFLSQLHSPSTATPPYLYEGGYTTLAAVRPQSLTLRQSQRSPDANINSSSPLNGHKQLN
QNNNAHINVADPYYSRSQAFANQQYSPTPSNCSSGAGSPYYAPGMSPCSLSPRSPVTNTQ
GTLPAKKLVQNNRPSVDGLFRDVSDIIDGELVSDPGHYMVASPEPAHRSPYHTSQQSSPR
RSTVQHYPGSRTEPEMRQIMGSYGSPEIRSSLCQLKEEVASSPIQYNAMSPCSNQNSPTH
SVYSNYDDNCYSPERVSPEFGVTSCAEVQRYQDTVSGMEKPYHVQYSISTSRPTAMQQYQ
AAAAAFYAAHQRSDVEGGSEWVKKYGNMSAMEMLFSESDGQPYLA
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgaacggaaagcctgcgagtttcgtaatgcaacgtcagcgttcgccgctgcaa
ccagtcgtagaatccgtgacatccaaagaccacattagagttaagaacgagtgtatctta
ttttcacagtccatcatgagcgggcgatggaatccgtctaccaacgtccacgcagccgaa
tccacgcccacaaaccttgaaggcccggagccaagaattctctcaaagaaacgaagagat
ttgatcaacgctgagatccgtgagctacaaaatcttcttccgttgaagaaaagtgcaaga
gaaagactctcatacctcggtatcttggcccttacaaacactttcatccgaaaggctact
tttttcaagaaagaatgcatcagttgcgatgcctcgatgagttccggtttggtttctgaa
ttcacttcgtcgctctgtggtttcctcctcgttttcaacagagaaggcaaaatcctgtat
tcgtcggaaaacattcttgactacttaggcaacacagtggtggaacttgccagtcaagga
gacagtatttatgacttcgtggacaaagaagaccacgaccaggtgcgcgcgcagttagaa
gttccgccacatgacgataggggtgaagcaagaaagctttcctttttctgccgaatggcg
acatcgcgatacatgaaaacacaaatgcgctcatggaagaacaagattatccacgtgacc
gggaaataccatagacccgagatgagcaacgattggtcggacacagtgttcgtggcagtt
tgtacgcccatcgagtcaaaaccagtgacagacgttcgacaccacccaagcccacgcgct
tgtgaatttaaagcagtacatggacctgacatgaaatttttggaggtaccaaacacagtt
gaatctcttttgggttacaagccagacgagcttgaaaatacgagttggtatgattggatt
tacccagaagatcttggacaagcgcgtcaacaacatctgaaatttgttaaagaagatgga
tcagcattcgcttgtgttttgaggatgataagaaaagatggatctgctgtttggatggat
attactgcggaaaagtcacaagaaagcatcggcaactcgttcatttgcaactacattgtc
attgatgaagaagaagttccttactttcgcattcatcataacttgcttcccttccccgag
cattatactgattcacagcgtcagtacctcgcctaccgttctactttgcttagtgcggca
ctcagcaacgacgcaaactcggccgggacttcacccttgacgtcaccgaccagtatcagc
cagcacgacctagcttctgcacacatcggacacccaatgtatggcgacaacctcgacaca
aaatctatccttcgccggcagttgattaaaaggaaaatgagctcactcgacagcccatta
tgttcaccacaaggctcctaccccggagatatgttctcagttccacccaacaaaatgttg
attcgcacagcttccgagatcaactacacaaacacaccctaccatgttccactccaccat
tcgacatcttaccccgaagcatcataccactcccatgttgcttacagacaagcacctgaa
gattcctttctttctcaactgcacagcccatccacagcgacaccgccttacctgtatgaa
ggtggttacacaacactggctgctgtccggccacagtctttgacattgcgtcaaagccag
cgatctcccgacgcaaacatcaattcctcgtctcctttgaacggccacaagcaactaaat
caaaacaacaatgctcatatcaacgttgctgatccgtattactcccgatcccaggctttc
gccaaccagcaatactcccctaccccatctaactgcagttcaggcgcaggttctccctac
tacgcacctggtatgtcaccttgcagcctctcacctcgctcccctgtcacgaatacccag
ggcactctcccggctaagaaattggtccaaaacaacaggccttccgtggatggtttgttc
agagatgtgagcgatatcatcgacggcgagttggtgagcgatccaggccactacatggtt
gcttcaccagaacctgcacaccgatcaccttaccacacatcgcaacaaagcagtccccgc
cgttcgactgttcaacattaccctggcagccgaaccgagccagagatgcgtcaaatcatg
ggcagttatggctcaccagaaatccgatcgagtttgtgccagttaaaggaagaagtcgcc
agctctccaattcaatacaatgcgatgtctccttgtagcaaccagaacagccccacacac
tcagtgtactccaactacgatgacaactgctactctccggaacgtgtctcccctgagttc
ggcgtgacatcttgtgcagaggtacagcgctaccaagacacagtcagtggtatggagaag
ccctaccacgttcagtattccatttcgaccagccggcctaccgctatgcagcaataccag
gcagcagccgcagctttctacgcagctcaccagcgaagcgatgtcgaaggcggatctgaa
tgggtgaagaagtatggcaatatgtctgcaatggaaatgctcttttccgagtcggacggc
cagccttatcttgcttga
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