Ciona intestinalis (yellow sea squirt): 100183671 Help Entry 100183671         CDS       T01056                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03040   Spliceosome Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100183671  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cin03019]     100183671    03041 Spliceosome [BR:cin03041]     100183671 Messenger RNA biogenesis [BR:cin03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      100183671 Spliceosome [BR:cin03041]  Complex B   Other components    Prp19-related factors     100183671  Complex C     100183671 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_15 TPR_2 TPR_8 TPR_12 TPR_1 TPR_10 DHR-2_Lobe_A Motif Other DBs NCBI-GeneID:  100183671 NCBI-ProteinID:  XP_026690906 Ensembl:  ENSCING00000006985 LinkDB All DBs Position 7:2455718..2464798 Genome browser AA seq 796 aa AA seqDB search MPERDLNFHEDDLPYEEEILRNPYSVKCWLRYVEHKEGSPAKEINMVFERALKELPGSYK LWYAYLRLRRSQLKGLCINDPMYEDVNNAHERALVFMHKMPRIWIDYCKLLVEQMKLTRI RRTFDRALRALPITQHTRVWPLYLNFVKKYPVHETAVRVYRRMLKLQPEDAEDYIEYLIS IDRLDEACVKLAEIVNDEHFLSKRGKSNHALWHELCTLISRNPDKVHSLNVEAIIRGGLK RFTDQLGQLWCSLADYYTRSGLFERARDIYEEAIETVTTVRDFTQIFDAYAQFEETVISS KMEQMTNNPSDDQDEDDTDIELRLARFEHLMDRRPLLLNSVLLRQNPHNVLEWLKRVELF KDQPREIINTYTEAIQTIDVKKSVGKLYTLWVSFAKFYESNDQIQDVSQLLVYIFSLIMH VHLSKTLNLILMVYADLEESFGTLKTCKAVYDKILDLRIATPQIIINYGMFLEENNYFED AFKAYERGVALFKWPNVYDIWNTYLTKFIKRYGGKKLERARDLFEQALDGCPAKFAKNLY LLYAKLEEEYGLSRHAMAVYERATKAVLTDQRHELFNIYLRRAAEIYGVTHTRPIYEKAI EVLPDEHARDFCLRFADLERKLGEIDRARAVYAHCSQMCDPRTSANFWEAWKSFEVKHGN EDTVREMLRIKRSVQATYNTQVNYMSAQMLAAAGNLTGTTSDLTPDGNLDNDGMKLLEQK ASHAAARANQEEMKPNKGILFVRSDKPPMETEISQVQNPDEIDIDDDDSETEDGPAVIQR KIVPDEVFGGMKKDED NT seq 2391 nt NT seq  +upstreamnt  +downstreamnt atgccggaaagagacctaaactttcatgaagatgacttgccatatgaagaagaaattctt agaaatccatattccgttaaatgttggttacgatatgttgaacataaagaaggatcacct gctaaagagatcaacatggtatttgagcgagccctaaaagaacttccaggtagttacaaa ctgtggtacgcttatctaagattgcgacgatcacagttgaagggactttgtataaatgat ccgatgtatgaagacgtcaacaatgcacacgaacgtgcgcttgtctttatgcataagatg ccacgaatttggattgattattgtaaactcctcgtagagcaaatgaagctgacacgaatc agacgaacatttgatcgcgcactacgtgctctccctatcacacaacacacacgagtgtgg ccgctctatttaaactttgtcaagaagtatccagttcatgaaacagctgtgagggtctat aggagaatgctaaaattacaacctgaagatgcggaagactacattgaatatttgatttct attgatcgacttgatgaggcttgcgttaaacttgcggaaattgtaaacgacgaacatttc ttgtctaagcggggcaagtcgaaccacgcattatggcacgaactgtgcaccctaatttct cgcaatcctgataaagttcattcattaaatgtggaagcaatcatccgtggtgggttgaaa cgcttcactgatcagcttggacaactgtggtgttcgcttgctgattattatacaaggagt ggtttgtttgaaagggcaagagacatatatgaagaagcgattgaaactgtgaccacagtg agagacttcacccagatatttgatgcttatgctcagtttgaggagaccgttatatcaagt aagatggaacaaatgacaaacaatccatcagatgaccaggatgaagatgacacagacatt gaacttcgacttgcgaggtttgaacatctcatggaccgaagacctttgctgctcaacagt gtcctgttaagacagaatcctcacaatgtattggaatggctcaaacgtgtggaattgttt aaagaccagcctcgagaaataatcaacacatacactgaagcaatacaaactattgatgtg aagaaatctgttgggaaactttacaccctgtgggtttcttttgcaaagttttatgaaagc aacgatcaaatacaagatgtgagtcaattattagtttatattttctctttaataatgcat gtgcatttgtctaaaactctaaatcttattcttatggtgtatgctgacctggaggaaagc tttgggactttgaagacatgcaaagcagtttatgataaaatccttgatctacggatcgcc accccacaaattatcatcaactatggaatgttcttggaagaaaataattattttgaagat gcatttaaggcatatgaaagaggagttgctttatttaaatggccgaatgtttatgatatt tggaacacgtatctcacaaagtttattaagagatacgggggcaagaagttggagagggcg agggatttatttgagcaagcacttgatggctgtccagctaagtttgctaaaaatctatat ttgttgtatgctaaactggaagaggaatatggattatcaagacatgctatggctgtttat gaaagagcaaccaaagctgtgttaacagatcaacgacatgaactgttcaacatatatcta cgtcgagctgctgagatatatggagtaactcacacaagaccaatatacgagaaagcaatt gaagttctccctgacgaacatgctcgagatttttgcctcagattcgctgatcttgaacga aaactcggtgaaatagatcgggctcgtgccgtgtatgctcactgttcgcaaatgtgtgac ccgaggacaagtgccaacttctgggaagcttggaagtcgtttgaagttaaacatggtaac gaagatacagttcgtgagatgcttcgaataaagagaagtgttcaagctacttacaatacc caggttaactatatgtcagcacaaatgttggcagctgctggaaatcttacaggcactaca tctgaccttacccctgatggtaaccttgacaacgatggaatgaaacttcttgaacaaaaa gcaagtcacgctgctgcaagggcaaaccaggaagaaatgaaaccaaataaaggaattctg tttgttaggagtgacaaaccacctatggaaactgaaatcagccaagttcagaatcctgat gaaattgacattgatgatgatgacagtgagactgaagatgggccagccgttatacaaaga aagatcgtaccagatgaagtgtttggtggaatgaaaaaggacgaggattag

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