Ciona intestinalis (yellow sea squirt): 100183682
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Entry
100183682 CDS
T01056
Name
(RefSeq) RNA-binding protein 28
KO
K14573
nucleolar protein 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100183682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100183682
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
100183682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RNA_pol_3_Rpc31
Motif
Other DBs
NCBI-GeneID:
100183682
NCBI-ProteinID:
XP_002130575
Ensembl:
ENSCING00000009238
LinkDB
All DBs
Position
5:complement(4900806..4905274)
Genome browser
AA seq
825 aa
AA seq
DB search
MQTFTVMNDTLSHKTVFVKGIPASCSNDQLKETFSVHGPIKEAFVVKTKSEHESKKCIGF
VTYQTNDDAKSAVNASPSTLEVDGHKLNVIFAKKKKFSKGNKNKRKAAVSNEEAGFDIVP
LECDNSDKTVEKVEEVATSNKFIVAIEGLKSINDISSLWKKKSLGEINSADVKKENETVL
VSFPNKQKALKATARINNTYFNDVVIHAALQVDTDSKEFRKSSKKSRLIIRNLSFFCTED
ELKSEFKRFGKITEVKIPVKPDGKKRGFAFVQFSHVLEAGKAIKEVNMSEIKGRKVAVDW
ALPREKYQEITKSDTKDEEVPKQEETTDLSEKASIEDDSQKEEEEEEKEQEEESEMEEDE
SEVEDEEEDEGSSEDESMDEEKQEEGAVKDKEADKKSKPQKRTESSDVHEGKTVFIRNLS
YESEEAELKIVMEKFGDINYCKIVINKATGLPKGSAFVQFATKEEAEKCIEAPQISLDGR
DLFVTLATTRAESTKLVKVKKEEGREKEDKRNLYLANEGLIRPGTQAAEGLSEIELNKRQ
RIENAKRLKLKNSNIFVSTTRLCVHNLPRAVDDAKLKELVNKVFENENRKPKIIECRVMR
DREKKTSNGVGRSLGFAFVALTKHEDSLKALRSLNNNPEIFGALKRPIVEFSLENRLAIE
AQMQKRKRQLTRNELKGAVENTAPKKKRKWDVPKPKVEKSKVTPSPILSKVDRKPFQGST
GTTLSGKKLKMPKHSGLKIRKRNKGNVLAQIKESKKLNRPPSVRNAQANKKQARAARPEP
QQPKEKRQRRSGKSKDVQMENDFNKLVAKYTSKFSSKLKGKWHES
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgtttacagtcatgaatgacactcttagccataaaacagtttttgtaaaaggt
attcctgcttcgtgttcaaatgaccaattaaaagagactttcagtgtacatggcccaatt
aaagaagcatttgttgttaagacaaaatctgagcatgaaagcaaaaaatgtattggtttc
gttacttaccaaaccaatgatgacgcaaaatcagcagttaacgcttcaccgagtacactg
gaagtggacggtcacaaactaaacgtgatttttgcaaagaaaaagaaattttccaaaggg
aataagaacaaacgtaaagcagcagtgagtaatgaagaggctgggtttgatatcgtgccg
ttggaatgtgacaattctgataaaactgtcgaaaaagttgaagaagtagcaaccagtaat
aaatttattgttgctattgaaggactaaagtctattaatgatataagttctttatggaag
aaaaaatccttgggtgaaattaactcagctgatgtcaaaaaagaaaatgaaacagttctc
gtctcatttccaaacaagcaaaaagctttaaaagcgacagctaggataaataacacctat
tttaatgatgtcgtaattcatgctgccttgcaagttgatacagattcaaaggagtttcga
aaatcatctaaaaaatctcggttaatcatcaggaacctaagtttcttctgtacggaagat
gagttgaaatctgagtttaaaaggtttggaaaaatcactgaagtaaaaatcccagtaaaa
ccagatgggaaaaaacgtgggtttgcatttgtgcaattctcacatgtattggaagcgggt
aaagcaataaaagaagtgaatatgagtgaaattaagggcagaaaagtagcagtagattgg
gctttgccgagggaaaaataccaagaaataacgaagtcagatacaaaagatgaagaagta
ccaaagcaagaagaaactacagatttatctgaaaaagcatcaattgaagatgattctcaa
aaagaagaggaagaagaagagaaggagcaagaggaggagagtgagatggaggaagatgaa
agtgaggtggaggatgaggaggaagatgaaggatcatctgaagatgaatcaatggacgaa
gagaaacaagaagagggagcagtaaaagacaaagaagctgataaaaaatctaagccacaa
aaacgaacagaatcctctgatgtccatgaaggaaaaactgtttttatccgaaacttgtcg
tatgaatctgaagaggcagaactgaaaattgtgatggagaagtttggggatataaattac
tgtaaaatcgttataaataaagcaacaggccttccaaagggttcagcttttgttcaattc
gcaacaaaagaagaagctgaaaaatgtatcgaggcaccacagatttctctagatgggaga
gatctattcgtcaccctagcaacaacccgtgcagagtcaaccaagcttgtaaaagtaaaa
aaagaggagggaagagaaaaggaagataaaaggaatttgtatcttgcaaatgaaggctta
ataagaccaggaacccaagcagcagaaggtctcagtgagatagagctgaacaaaagacaa
cgcattgaaaatgccaagaggctcaaactaaaaaattccaatatatttgtctctacaact
cgactgtgcgttcataacctaccaagggcagttgatgacgcaaagttaaaggaattggta
aataaggtattcgaaaatgaaaacagaaaaccaaagattattgagtgcagagtgatgagg
gatcgggaaaaaaagaccagcaatggcgttgggcgttcattgggttttgcattcgttgca
ttaacaaaacatgaagactcattgaaagcacttcgttcacttaacaataacccagaaatt
ttcggggcattaaagagaccaattgttgagttttcactcgaaaatcgtctcgcaattgag
gctcaaatgcagaaaagaaagcggcaattgacaagaaatgagctaaaaggagctgttgag
aacacagcacctaaaaagaagagaaaatgggatgttccaaaacccaaagtagagaagagt
aaagtcacaccttctccaattctgagtaaagtagaccgaaaaccgtttcagggaagtaca
gggaccacattaagcgggaaaaagctgaaaatgccaaagcattctggcctaaaaattcga
aaacggaacaagggcaatgttctggcacagattaaagagagcaagaaattgaatcggcca
ccatctgtaagaaatgcccaagcaaataagaagcaagcacgtgctgcaagacctgaacca
caacaaccgaaagaaaaaaggcaaagaagaagtggcaagagtaaagacgtccaaatggaa
aatgatttcaacaaattagttgctaagtacacttcaaaattcagttcaaaattgaagggc
aaatggcatgaaagttaa
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