Ciona intestinalis (yellow sea squirt): 100183686
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Entry
100183686 CDS
T01056
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100183686
03016 Transfer RNA biogenesis [BR:
cin03016
]
100183686
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100183686
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100183686
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
100183686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
RE_TdeIII
UFC1
CMS1
Motif
Other DBs
NCBI-GeneID:
100183686
NCBI-ProteinID:
XP_026692814
Ensembl:
ENSCING00000001176
LinkDB
All DBs
Position
1:8515626..8529179
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AA seq
858 aa
AA seq
DB search
MTAFENLGVMPEIGKMIMEIGWLLPTDIQAESIPLILGGGDVLMAAETGSGKTAAFSIPV
IQIVHETLSSTRGGGGMKGGNALPAIFNTWQMNPYDRGNAFAISSDGLLCQSREVREWHG
CRSTRGVTKGKYYYEVLCKDEGLNRVGWSTLSADLNLGTDKDGYGFGGTGKKSNSRQFNT
YGEPFTMHDIIGCFLDMDEGRIKYSKNGIDLGHAFDIPGFLRKQPMFAACVLKNSELSFN
FGGEPFKFPPSGQFVALSKAGDQSSVTSAKTGSAVVKKQNTKRSNNSPYAIIIEPSRELA
EQTAKIIRDLKKFVQNPTVSEVLVVGGVPASDQLKLIQQGVDILIGTPGRVDDFISTGKI
DLSQVRFLVLDECDGLLTAGSGGFIKRTHSHIPQVTSDGKRLQVIVCSATLHSFDVKRLA
NEIMHFPVWVDLKGEDSVPETVHHVVVPVDPIRDPSWMGLRNHVPTDAVHKRDNVDSRAK
ETKEKWSEGIKILKGEYCVRAIRDHKMEQAIIFCRTKLDCDNLERYFKQVGGHDDQLSCV
CLHSDRKPHERRGNLEKFKNRKVRHLICTDVAARGIDIRGVPFVINMTLPDDKQNYVHRI
GRVGRAERMGLAISLVATKHKEKVWYHSNCNNKGRGCFNTNLTDFGGCCIWYDENGLLGD
IESHLKITIEQTTPKMEIPVDEFDGKVVYGSKRSKSNISKYKDHTDILAPSVKELQALER
STQTSFLQMRMNMSRILKGNVWYHSNCNNKGRGCFNTNLTDFGGCCIWYDENGLLGDIES
HLKITIEQTTPKMEIPVDEFDGKVVYGSKRSKSNISKYKDHTDILAPSVKELQALERSTQ
TSFLQMRMNMSRILKGKS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgtttgaaaacttgggggtgatgcctgagattgggaagatgataatggagatt
ggttggctacttccaactgatatacaagcagagtcgatccctttgatcctgggaggcggg
gatgtccttatggctgcggagactgggtcagggaagacggcagctttcagtatccctgtt
atacagatcgtgcatgaaacgctatcgagtacaaggggtggtggaggtatgaagggtggc
aatgcattgcctgctatcttcaacacctggcagatgaacccatacgacagaggaaacgca
tttgcgattagttctgatggtttgttgtgtcagtcaagggaggtgagggaatggcatgga
tgtaggtcaaccaggggagttactaagggcaagtattattatgaggtattatgcaaggat
gaaggtttaaacagagtaggttggtcaacactgtcagcagatttaaaccttggtactgat
aaggatggatatggctttgggggaacggggaaaaaatccaacagtcgtcagtttaacacg
tacggtgaacctttcacaatgcatgatatcattggctgtttcttagatatggatgaaggt
agaatcaaatactccaaaaacggcatcgacctcggccatgcgtttgacatacctggtttc
ctaagaaaacaaccaatgtttgccgcttgtgttttaaagaactccgaacttagtttcaac
tttggtggtgagccgtttaaattcccacctagtggccagtttgtcgcactttcaaaggcc
ggcgaccaatcaagcgtaacaagcgctaaaactggatccgctgtcgttaagaagcaaaac
acaaagagatccaacaactctccttatgcgatcataattgagccttcccgtgagctggcg
gaacaaacggcaaaaattattagagatttaaaaaaattcgttcaaaatccaactgtgtct
gaagtcctcgtggtgggtggtgtgcctgcaagtgaccagttaaagttgattcaacaagga
gttgatattttaattgggacgccgggtcgagtggatgattttatctcaactggaaagatc
gatttaagccaagtaaggttccttgtactcgacgaatgcgatggattattaacagctggt
agcggggggtttatcaaacgaacacattcccatataccacaggtaacatctgatgggaaa
cgtctccaagttatcgtatgttcggctactttgcatagcttcgatgttaaaaggcttgct
aatgagatcatgcatttccctgtgtgggtggatttgaagggtgaagactcagtacctgag
accgtccaccatgttgttgttcccgtggatcccataagggaccctagttggatggggttg
cgcaatcatgtaccgaccgacgccgtgcataagagagataacgttgacagcagagctaag
gaaactaaggagaaatggtcggaagggatcaaaatattgaaaggcgagtattgtgttcgt
gcgatacgcgaccacaaaatggagcaagcgatcatattctgccgaacgaaactcgattgc
gacaaccttgaacgatatttcaaacaagttggtggtcacgatgaccaactatcgtgcgtg
tgtctgcatagtgatcggaaacctcatgaaaggagagggaatttggagaagtttaaaaat
cggaaggtgcgacacttgatatgtacagacgtagcagcgcgtggcatcgacatacgaggc
gttccattcgttataaacatgacgctacctgatgataaacagaactatgtccatcgcatt
gggagggtggggagagctgagaggatggggctggctatctcgctagtggctactaagcac
aaggagaaggtctggtatcacagcaattgcaataataagggcagaggttgcttcaataca
aacctcactgattttggtggttgttgtatttggtacgatgagaacggcttactcggagac
attgaatctcatctgaaaataacaatcgaacaaacaacccccaaaatggaaatccccgtt
gatgagtttgatgggaaggttgtatacggcagcaagagatcaaagtccaacatctccaaa
tacaaggatcacactgacatactggcacctagtgtaaaggaactacaagcattagagcga
tctacacaaacctcatttttacaaatgaggatgaatatgtcaagaatattaaaaggaaat
gtctggtatcacagcaattgcaataataagggcagaggttgcttcaatacaaacctcact
gattttggtggttgttgtatttggtacgatgagaacggcttactcggggacattgaatct
catctgaaaataacaatcgaacaaacaacccccaaaatggaaatccccgttgatgagttt
gatgggaaggttgtatacggcagcaagagatcaaagtccaacatctccaaatacaaggat
cacactgacatactggcacctagtgtaaaggaactacaagcgttagagcgatctacacaa
acctcatttttacaaatgaggatgaatatgtcaagaatattaaaaggaaaatcataa
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