Ciona intestinalis (yellow sea squirt): 100183707
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Entry
100183707 CDS
T01056
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100183707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100183707
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
100183707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Nucleolin_bd
RuvB_N
AAA_16
AAA_22
AAA_33
TIP49
AAA_5
AAA_28
AAA_14
nSTAND3
AAA_18
AAA_2
Rad17
RNA_helicase
NPHP3_N
TsaE
Mg_chelatase
IstB_IS21
ABC_tran
ATPase
AAA_17
AAA_3
NACHT
Parvo_NS1
NB-ARC
Viral_helicase1
AAA_7
Sigma54_activat
Sigma54_activ_2
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
100183707
NCBI-ProteinID:
XP_026693705
Ensembl:
ENSCING00000002491
LinkDB
All DBs
Position
Unknown
AA seq
793 aa
AA seq
DB search
MSLSFDRALPGRIKKYVETHSGFVDVQFMADCLYKQYRFDYGRRKLNPFRKLVGKVYADL
LKTEEIQNNLPPSSETSDDEKVLVEYKVFMQDSNTMNNSLHAIYNNVSLVKSPKPPSLSP
QNYEQINQSLLPDDTKDENLTINQDSAGSNANVTQHNLVTNEDRLKENKKKLRRKRSKME
QNKKNLKKLKTDPNDSDDFHSPNKKKFSFIDSQVSFVDVAGNQDALNELARLLLHMCHPE
VYSALGVSPPRGILLHGPPGCGKTLLGNAIAGQLGIPLLRLVGPELIGGVSGESEQRIRD
VFEIAQQTAPCVLFLDEVDVIAQRRENSSKDMERRVVAQLLSCLDDFNKDSQQVLVVGAT
NRPEVLDPALRRSGRFDREIMLGIPDESAREKILKVLSQKMKLSDDVNFGLIARLTPGFV
GADILSLCREAAMQTVARVLNINKTNTESNILLDWLSNRSPVTDEQLELMAIETSDFEEA
LCVVQPSSKREGFATVPDVTWDDVGALTDVREELSIAILGPVRNPMAFASLGLSRASGVL
LAGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGESERAVRQCFERARNSAPCVVF
FDELDSLCPRRTSAESGASARVVNQMLTELDGLESRKQVFVVAATNRPDIIDPAILRPGR
LDKVLYVGIPTTEDRIQILRTITKNGKKPLLDEAVCLSNLGADDRCSGFTGADLSALMRE
ASLDAIRGSVNHGWNVVLPQSDNNFHSIKITLVNINAAFKKVKPSVSEQQGNINHYNIGG
LLHTCLPGFLMFG
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcagttttgatagagcattgccaggaagaattaaaaagtatgtggagactcac
agtggatttgtggatgtacaattcatggctgactgtttgtataaacaatacagatttgat
tatgggagaagaaaattgaatccatttagaaagttggttgggaaagtttatgccgatttg
ttaaagacagaagaaattcaaaacaatttacctcccagctcagaaacatcagatgatgaa
aaggtgttggtggaatacaaggtgtttatgcaagatagcaacacaatgaacaactcactt
cacgccatttacaacaatgttagcctagttaaatcacccaaacctccaagtttatctcct
caaaactatgaacaaatcaatcaaagtttacttccagatgatacaaaagatgaaaactta
acaatcaaccaagactcagctggtagcaatgcaaatgttactcagcacaatttggtcaca
aacgaagaccgcttaaaagaaaataaaaaaaaacttagaagaaagcgatcaaaaatggaa
caaaataaaaaaaatttaaagaaattgaagaccgacccaaatgactcggatgacttccat
tcaccaaataaaaagaaattttcatttatagattctcaagtttcatttgttgatgttgca
ggaaaccaagatgcattgaatgaactcgctcgtctcttacttcacatgtgtcatcccgag
gtctattcagccctgggtgtttcccctccacgtggtattttattacatggacctccaggt
tgtggaaaaactttacttggtaacgccatagctggtcagttagggattcctctgttacgc
ttggttggtccggagttaattggaggtgtttcgggtgaaagtgaacagcgtattcgtgat
gtttttgagatcgctcaacaaacagctccatgtgttttatttctggatgaagttgatgtc
atcgcgcaacgaagagaaaattcatcaaaagacatggagcgaagagtagtcgcgcaactt
ttgtcatgcttggatgattttaacaaagatagtcaacaagtgttggtcgtcggggcaacc
aatcgtcctgaagttcttgatccagctcttcgaagatctggaaggtttgatcgtgagatt
atgttgggcattcccgatgaatcagccagagaaaaaatattgaaagttcttagtcaaaaa
atgaaattatctgatgacgtcaattttggtttgattgctcgtttaactcccggatttgtc
ggagctgatatactatctctatgtcgtgaagctgcaatgcaaacagtcgctcgtgttctt
aacataaataaaacaaacacagaatccaatattttattggattggttaagcaaccggagc
ccagtaactgatgaacaattggaattgatggcgattgaaacaagtgatttcgaagaagcg
ttgtgtgtcgtgcaaccttcatcaaaacgtgaaggatttgcgacagttcctgatgtgaca
tgggatgatgttggtgcactgaccgatgttagagaagaactttccattgcgatattgggc
ccagttagaaacccgatggcgtttgcatcacttggattgtcgagagcatccggagtatta
ttagctggtcctccaggctgcggaaaaactctgctcgcaaaagcgatcgccaacgaatct
gggataaattttatttcagtgaaaggacctgagcttctcaacatgtatgttggtgaaagt
gaacgagctgtaaggcaatgttttgaacgagcgaggaattctgctccttgtgtggtcttc
tttgatgaacttgattcactttgtcctcgaaggacatcggccgagagtggagcaagtgca
agagtggtcaatcaaatgttaaccgaacttgatggcctggaatcaagaaaacaagttttt
gttgttgctgcgaccaacagacccgatattattgatccagcgatactcaggcctggtcga
ctagataaagtactttacgttggaattccaaccacggaggatagaattcaaatattaaga
acaataacaaagaatggaaagaaacctcttcttgatgaagctgtctgtttgtccaacctc
ggtgctgatgatcgttgtagcggatttacaggggctgatttgtctgcactcatgcgtgaa
gcatcattagatgcaatccgtgggagcgtcaaccatggttggaatgttgttttgccacaa
agtgataataatttccattcaataaagataaccttggtaaatattaatgctgctttcaag
aaagtcaaaccatcagttagtgaacagcaaggcaatatcaatcattataacattggtggt
ctgctccatacatgtctgcccgggtttttgatgttcggatga
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