Ciona intestinalis (yellow sea squirt): 100183747
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Entry
100183747 CDS
T01056
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100183747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100183747
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100183747
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100183747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
SRP54
AAA_16
nSTAND3
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
100183747
NCBI-ProteinID:
XP_002127726
Ensembl:
ENSCING00000003779
UniProt:
F6TIM2
LinkDB
All DBs
Position
11:complement(4885934..4890156)
Genome browser
AA seq
430 aa
AA seq
DB search
MASVKPEEKGIDLSITQDYKLAKDNELRFEVESNARVKLDLLEGSAEVFGTELVRSRSYI
FESGAKIAVFTWFGCSVKLSGKVEASYVSKDTPMVIYLNTHAAVEQLRKSAEQDDIRGPR
VLVVGAQDVGKTTVCRLLLNYAVRLGRKTTLIDIDVGQGGVSIPGSVGALTVERPADPVD
GFDLKVPLVYHFGHTAPNGNIKLYETLISRLADVFNAKCDYNKQVKHSGCIINTCGWVKG
QGYQCILHTAQSFEADVVLVLDSERLYNDLKRDLPDFVNVILQPKSPGVVERPREARRDN
RENKIKEYFYGPRKIYFPHAFNIKFSEVEIYKIGAPSLPDSCLPLGMEPENTQTKLVQVT
PGRDMTHHILSLSMAESLDENLIETNVAGFVVVTNVDPDNQVFSVLSPAPRPLPRKYFLI
MDIRFIDINK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgtaaaaccggaggagaaaggaatagatttgtcaataacgcaggattacaaa
ctcgcgaaagacaacgagttacgatttgaagttgaatcaaacgcgcgagtgaaattggat
cttcttgagggaagcgcggaagtgtttgggacagaacttgtcagatcgagatcgtatata
tttgaatcgggggcaaagatcgctgtcttcacttggtttggatgttcagttaaactatca
gggaaggtggaagccagttatgtatcgaaggacacacccatggttatctacctcaacact
catgcggccgtcgagcaactaaggaaatctgcggagcaagatgatatccgaggccctcgt
gtgttggtagtcggtgcgcaagacgtggggaagacgacagtttgtaggttactgttaaac
tatgctgtccgtctcggtcggaaaacaactttgattgacatcgacgtcggacagggtggt
gtctcgatacccggttcagttggtgcgttaaccgtcgagcgacctgctgaccccgtagat
gggttcgatctaaaggtaccgttggtttaccactttggacacactgcaccgaatggaaac
atcaagctatacgaaacattgatatcaagacttgccgatgtttttaatgctaaatgtgat
tacaacaaacaagtgaaacacagtggttgcatcattaacacatgtggctgggtgaagggt
caaggttaccaatgtattctacacactgcacaatcgtttgaagccgacgttgtccttgtt
cttgatagtgaacgtttatacaatgatttgaaacgggatttaccggatttcgttaatgtt
atacttcaacccaagtctccaggtgttgttgagcgaccgcgtgaggcaagacgggacaac
cgtgagaataaaatcaaggaatatttctacgggccacgaaagatatattttcctcatgct
tttaatattaagttcagtgaagttgaaatttataaaatcggagctccgtcgttgccggat
tcatgtttgccattgggtatggaaccagaaaacacacaaacgaagcttgtccaagtaacc
ccgggtcgtgacatgacacatcatatattaagtctaagcatggctgaatcacttgatgaa
aacctcattgaaacaaacgtagcggggtttgttgttgtaactaatgttgaccccgataac
caggtgttcagtgttttgtccccagcgcccagacctttgccaagaaaatactttttaata
atggacattcggttcatagatattaataaataa
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