KEGG   Ciona intestinalis (yellow sea squirt): 100183839
Entry
100183839         CDS       T01056                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100183839
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cin03041]
    100183839
Spliceosome [BR:cin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100183839
 Complex C
   U5 SnRNP specific factors
    100183839
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_DCAF4 eIF2A Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Ge1_WD40 Beta-prop_Vps41 Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 100183839
NCBI-ProteinID: XP_018668441
Ensembl: ENSCING00000006509
UniProt: F6PW34
LinkDB
Position
8:3505633..3507067
AA seq 351 aa
MSTLTEKRSAELGALAIPSKRPRNEYEVATYENQKSVVAHGPPRTSSLLAPIMLLTGHEG
EIYSSKFHPEGNMIASTGFERLIYLWNVYGECDNFHVIKGGHKGAVLDLQFNTDGSNIIT
ASTDKTVGLFDSETGERIKRMKGHNGIVNTCTTARRGDPLVASGSDDCTVKIWDTRRKGA
IKSIQLTYQITAVSFNDTSESVITGGIDNVIKVWDIRSEKSYIELQGHADTVTGLTVSKD
GSFVLSNSMDCTMRKWDIRPFAPQQRCTNLYMGHKHNFEKNLLRCSWSPDDSKIAAGSSD
RDVCVWNATNQQLIYKLPGHDGSVNDVQFHPFQPIVMSCSSDKQIYLGEIQ
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgtctacgttaacggagaaaagaagcgcagagcttggagctttagctattccatcaaag
cggccacgaaatgaatacgaagtcgcaacttatgaaaatcagaaatctgtcgttgcacat
ggcccgcctcgaacatcaagtctgctggccccaattatgctactgacgggtcatgagggg
gaaatctacagctccaaattccacccggaaggcaatatgatagcttcaactggctttgaa
aggttaatctatttgtggaacgtgtatggtgaatgcgataactttcatgtcataaaaggg
ggtcataagggagctgtacttgatctacagttcaacacagatgggtctaacattatcaca
gccagtactgacaaaactgttggtctttttgactccgaaacaggagagcgaataaaacga
atgaaaggccataatggtattgttaatacttgcacaacagcaagaagaggtgacccattg
gttgcgtcgggtagtgatgattgcaccgtaaaaatatgggacactagacgaaaaggggca
atcaaatcaattcagttaacgtaccaaattacagcggtttcttttaacgatacatcggaa
agtgttattactggtggaattgataacgttattaaagtttgggatattcgctcggaaaaa
tcatatattgaactccaaggacatgcagacactgtcactggcctcacagttagcaaggat
ggctcattcgttctatcgaattcaatggattgcacaatgaggaaatgggatatacgacca
ttcgcaccacaacagagatgcactaatctatacatgggtcacaagcataactttgagaag
aatttgttaaggtgcagctggtctccagatgatagtaagatagctgctggatcttcggac
agggacgtgtgtgtttggaacgctacaaaccagcagttgatttacaagttaccgggccat
gatggctcagtgaacgacgtacaatttcatccatttcaacccatagttatgtcgtgttca
agtgacaaacaaatatatcttggtgaaatacaatga

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