Ciona intestinalis (yellow sea squirt): 100183959
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Entry
100183959 CDS
T01056
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20 isoform X2
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100183959
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100183959
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
100183959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
AAA_19
Baculo_PEP_C
Nrap_D5
DAHL
Motif
Other DBs
NCBI-GeneID:
100183959
NCBI-ProteinID:
XP_018667845
LinkDB
All DBs
Position
6:473373..476190
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AA seq
734 aa
AA seq
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MSNQIAHDLDSKTRTDDIAAQESVTFEDILVSDFVLSGLKKSGFHKPSPIQLKAIPLGRC
GFDLVVQAKSGTGKTCVFSVIALDSIDAKSAALQVIVLAPTREIALQIHEVVSTIGQDIE
QLSVQVFIGGTLVSEDRQKAKRCHIAIGSPGRIKQLISLGVLAVNNVRLFVLDEADKLVE
EGGLQQQINWIYSSLPSTKQMLALSATYPEALAKFLTKYMQQPTFVRLNPTDPSLLGLKQ
YYLLVKECKLPHQLFEEKTRCIIEILSSMTYQQALLFSNYHTRAETLCNALNSSGWRSTF
ISGNMEQWRRTEAITRLKSYQCRILISTDLTSRGIDAQNVDVVINMDVPTDWETYMHRIG
RAGRFGAYGTAVSLVSPGVEASRLHAIAAQCNASIAPLPADFRAILNDQKSNVKLQENLN
ENFKSVNSRVKISCPNLQENLNEQLTSVNNVEISCPNLRLQVKNEHGDSELSADTTRTSD
SFVGSEKYIDTVTMQNDRAKQSYPVIDSLQDVMQQSACLSQNLHYLDMNYKELVADFEYF
KKNGIFLAPPKKLQNEEQKTTNEIELKLDDITKKVDQNLKLSDLSSVNGSMKNEAVLNKN
SGYALRVKCKEIVKSEHTEKLMCSKVKAEQATENKETVNFTAKTDSISETTAAKLEQMPS
KCALTRITMLAKVTQRFLMKMMTVQKLDFNLMRTFLTPTLKKKIKFSQSVNYHLKQTVNI
VCVLRKKYMPKICT
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaaatagctcacgatctagactcaaaaacacgaacggacgacattgccgcg
caagaatcggtcacttttgaagatattttggtttcggacttcgttctttctgggttaaaa
aagtcgggatttcataaaccgtcgccgatacagctcaaagcaataccgctcgggagatgt
ggttttgacctagtcgtccaagcaaaatccggtaccggtaagacgtgtgtgttttccgtt
atagcacttgatagtatagacgcaaaatctgcagcattacaagtcattgtgctcgcccca
acgcgtgaaatcgcgctacaaatacatgaagtagtatccacaattgggcaagacattgaa
caattgtcagtccaggtttttattgggggtacactggtctcagaagaccgacaaaaggca
aaacgatgtcacattgctatagggtcgcctggcagaattaaacaactgatttcgctgggt
gttttagctgtaaataatgtccgtcttttcgttttggatgaagctgataaactagtggaa
gaaggtggcctacaacagcaaattaactggatttattcctctttgccaagcactaagcag
atgcttgcgttatctgccacttatcctgaagcgcttgcgaaatttttaacaaaatacatg
caacagccgacatttgtgcgattaaatccaacagacccttccctacttggtcttaaacaa
tattatctgctagttaaagaatgtaagctaccgcatcagttatttgaggaaaaaacacga
tgtattattgaaattttaagcagtatgacgtaccaacaagcgctattgttttccaattat
catacaagagcagagaccttatgcaacgcactaaatagctctggctggcgatcgactttt
atttcaggcaatatggagcaatggcggcgtactgaagcaataacgaggctaaaatcttac
caatgcaggattctaatatcgactgatctaacttcgaggggaattgacgcccagaatgtg
gatgtagttatcaatatggatgtacctaccgattgggagacatatatgcatagaattggt
cgcgctggaaggtttggggcatatggaacagctgtttcgcttgttagtcctggagtagaa
gcctcgaggctacatgctatagctgcccaatgtaatgcttctatagcacctttgccggct
gattttagagctattttaaatgatcaaaaatcaaatgttaaattacaggaaaatttgaat
gaaaattttaaaagtgtcaatagccgtgttaaaatttcctgcccaaatttacaggaaaat
ttaaatgaacagttaacaagtgttaataatgtcgaaatttcatgcccaaatttacggtta
caagttaaaaatgaacatggagacagtgaattaagtgcagacacaacaagaacaagtgac
agttttgttggttctgagaagtatatcgacactgtgacaatgcaaaatgatcgtgcaaaa
cagtcctatccagtgattgatagcctacaggatgttatgcaacaaagtgcatgtttgagt
cagaacctacattatcttgatatgaactataaagaattagtagcagattttgaatacttt
aaaaaaaacgggatttttttggcgccaccaaaaaaattacaaaatgaagaacaaaaaaca
acaaatgaaatagagttaaaattagatgatattactaaaaaagtagaccagaatttgaaa
ttatctgatctttcaagtgtaaatggtagcatgaaaaatgaagctgttttgaataaaaat
tctggctatgccttgagagttaagtgtaaggaaatagttaaatcagaacatactgaaaaa
ttaatgtgttccaaagtgaaagctgaacaagcaactgaaaataaagaaactgtaaatttt
actgctaaaacggatagtatcagtgaaactacagcagcaaaacttgaacaaatgccatca
aaatgtgcactgacgaggattacgatgctagcgaaagtgactcagcgctttctgatgaaa
atgatgactgtgcaaaaactggacttcaatctgatgcggacctttttaacccccactcta
aagaaaaagatcaaattttcccagagtgtcaattaccatctaaaacaaactgtgaacatt
gtatgtgtcttgaggaaaaaatatatgcccaaaatttgcacatga
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