Ciona intestinalis (yellow sea squirt): 100183988 Help Entry 100183988         CDS       T01056                                  Name (RefSeq) symplekin   KO K06100   symplekin Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     100183988  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cin03021]     100183988    03019 Messenger RNA biogenesis [BR:cin03019]     100183988 Transcription machinery [BR:cin03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      100183988 Messenger RNA biogenesis [BR:cin03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      100183988     U7-dependent histone pre-mRNA processing factors      100183988 SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N GRIP NMO INTS1_R4 Motif Other DBs NCBI-GeneID:  100183988 NCBI-ProteinID:  XP_009860228 LinkDB All DBs Position 11 Genome browser AA seq 1333 aa AA seqDB search MEPQRKRSRKFKEEINSSQEQDDRRKLTTVDLVIDLLNKASMSVEDSVKVERLQQVKELV INKQPEMLDNFTDEVVAFQADRSQEVRKFVVGFMEEACKKDPELFSKLLLNLHMLLVDEN VNVLKKVIQSSTQLYRICVQWISTHKNISNMLKSSWKTMCDIQQRIFELFDSENDGVRTQ VVKFAEKVILTLSEKHRLSELPKKLEVFSSLDQLPNNHTILVKSELKSLGVSLLEKLLSF VASPAISSVNLMASMGTLTTIAKQRPQFISTVVPAFETLHANLPPTLAKTQVTSVRKHLK MQLLNLLRHPASIEFHPQITNLLYDLGTNSSEIAKNMPNVNAAMRDKKSASKKRTTDEIK GAEMSQNKKAKVEDDYNEYGEEDVGKPDVGKVPEASGSRSIQQHNTAIDMTASELVPLLS PENVANLVLLSMVMLPDKIPDAFQASYTPIESAGTIDQKKHLARLLSIQMTAVGIGSGVQ HTAEMEAKEIAKKQMEKEKKELEKKIPIQTLIGGTTTSDVPEPVEVKQESKPLEPTQPAV PMKGMQRRIQGFHLASITKPLSLEAKDKIIKMAVLRVLKSERSAIAGGIHSRWQKILTNL VAQFGGDLHRSLAKFILADIRNRSQLAFQWLYEEFNIYLENARGINDKAAMENYDACLTG LLQGLLEKQDSREGLFTKLVLQAPLLTDSAIKVVHSYCEDERRSQTTMLLVRTLLSHRPT RRMQFLRVLLDLSTFKIETVRQNSIEIVKELYENQKYRDFIEQYAMTNLSYLKEAEPPND IRQEESDKTWNEEQMKQCFQLCLSLLPTNHALVHNLAAVYVEASANIKRVILHSLDAPVH GVGMSSPELLKLVEECPKGAETIVTRMLHILTDREHPSPSLVCKVRDLYQKRVPDVRFLI PVINGLEKYEVLAVLPKLIKLNPTVVKGVFNRLLGIQRHYSSEPSVSAITPVELLVALHT IDQSKADVKFVIKATSLCFAEKAVYTSEVLVTVINHLVELPVIPTLLMRTVIQALITYSR LSGFVMNVLQRLIMKRVWEQTKVWEGFIRCCQRMKPQSFQVLLQLPPAWLSNVFETFPDL REPLLQYVNKLTPQQRQHISPAIVSVLEVSPEQAALKAQREMQEKLARSKEQEKLAQEWE RKERDRKAALQAQQEIMRINAQLAKQESERQKRNQEASLDVKVETNKEGDGLLGAFPGSN PQPSLLGPPPTNATPLLNPPMQVQADIKPVILPASSTPPVSTNPPALNTTASPAKAITPT PLPPATHLPPPGIILPPNLPLPPFQYNVPPPTLMVAPPAAIPPSSTSNQSPAQAEVKTER SATPTQDESDDVN NT seq 4002 nt NT seq  +upstreamnt  +downstreamnt atggagccgcagcgtaaacgaagccgtaagttcaaagaggagataaattcttcacaagaa caagatgatcgaagaaaacttaccaccgttgacttggtgattgacctccttaacaaagct tccatgtccgtggaggattccgttaaagtagaacggctgcaacaagtcaaggaacttgtg ataaacaaacagcctgagatgttggataacttcactgatgaagtggttgcgtttcaagct gatcgatcgcaagaagtgagaaagttcgttgttggattcatggaagaggcgtgcaaaaaa gacccagagttattttccaagctgcttcttaaccttcacatgttacttgtcgatgaaaat gttaatgttttgaaaaaagtaatccagtcatcaacccagttatacagaatctgtgtgcag tggatcagcacacacaagaatattagcaatatgctcaaatcgagttggaaaactatgtgt gatatacagcagaggatttttgagctatttgattctgaaaatgatggggtccgaacgcag gtggtcaagtttgcagagaaggtaattctcaccttatccgaaaaacatcgtttgtcggaa ctccccaagaagttggaggttttctcctccttggatcagctcccaaacaaccacaccatt ctcgttaagtctgagttaaaatctctcggagtatcgctgctcgagaaacttctttctttc gtggcttcaccagcaatatccagtgtcaatctgatggcatccatgggtactcttactaca atagcaaaacagagacctcaattcatatctacagttgtacctgcctttgaaacactgcat gccaacttgccccctacattggcgaagacacaagtaacaagtgtgagaaaacatctgaaa atgcaacttctaaatctgctgcgtcatcctgcttctattgagtttcatccacagatcacc aacttgttatatgacttgggaacaaattcatctgagattgcaaagaacatgcccaatgtt aatgccgctatgagggataagaaatctgcgagtaaaaaacgaacaacggatgaaataaaa ggagcggaaatgtctcaaaacaaaaaggcaaaagttgaggatgattacaatgaatatggg gaggaagatgttggaaaaccggatgttggaaaagttccagaagcatcaggatcacgcagc atccagcaacataacacagctattgatatgacggctagcgaacttgttcctttgctctcg ccagaaaatgtggccaaccttgttttactcagcatggttatgctccctgataaaatccca gatgctttccaagcctcttatactccaatagagtcggctggaacgattgatcagaagaaa catcttgctcgtcttctttccatccagatgacagcggtcgggatcggatcaggggttcaa cacactgcagaaatggaggcaaaagaaatagcgaagaaacaaatggagaaagaaaagaaa gaacttgaaaagaaaatcccaatccaaactcttattggtggaacaacaacctctgatgtc cctgaaccggttgaagttaaacaagagagcaaaccattagagccaactcaaccagctgtc cctatgaaagggatgcagagaagaatacaaggattccatctagcaagcattaccaagcct ttaagtttggaagcaaaagacaaaataatcaagatggcggttctacgtgtgcttaaatca gaaagaagtgcaattgctggtggaattcactcaaggtggcagaaaattttaacaaacctt gtagctcagtttggtggtgatctgcacagatctcttgccaaattcattctcgctgacatt cgaaatcgttctcaactagcattccaatggttgtatgaagagtttaatatttaccttgaa aatgctcgtggaattaatgataaagctgccatggagaattacgatgcgtgtcttactggg ctgttacaaggactgctggaaaaacaggattcaagagaaggcctttttacaaagcttgtg ttacaagctcccttgctgactgactctgccatcaaagtagttcattcgtattgtgaggat gaacggcggtcccaaactaccatgttgctcgttcgtaccctgctgtcacacagaccaacg agaagaatgcagtttctgcgtgttctgcttgacttaagcacttttaaaattgaaactgtg cgccaaaattcaattgaaatagtaaaggaattatacgaaaatcagaaatatcgagatttt attgaacaatatgcgatgaccaatttatcttacttgaaagaagcagaaccaccgaatgat attcgacaagaagaatctgacaaaacttggaatgaggaacaaatgaaacagtgtttccaa ctctgtttatctcttctgcccaccaaccacgcacttgtacataacttagctgcagtttac gttgaagcctctgcaaatataaaacgagtgatccttcattcgttggatgctcctgtgcat ggagtaggaatgtcttctcctgagctacttaaactggtggaggaatgtccaaaaggagct gaaactatcgtgacaaggatgttgcatattctcactgacagagaacacccatcacccagc ttggtatgcaaagttcgtgacctttaccagaagcgtgtgcccgacgtgcgtttcctaatc ccggtaatcaacgggctcgaaaagtacgaggtgctcgctgtgctaccaaagcttataaaa ctgaacccaactgttgtaaaaggggtgtttaatagattacttggcatacagcgtcactat agttcagaaccttctgtgagtgcaataacacctgtggaactgcttgtagcattgcacaca atagaccaaagcaaggcagatgtcaaatttgttattaaagcaacaagtttatgttttgct gagaaagccgtatatacatctgaggtgcttgtaacagtgatcaaccatctggtggaactt ccagttattcctactctgttgatgaggactgttatacaggcactcatcacatattcacgt ttgtctgggttcgttatgaacgttcttcaaagactgataatgaaaagagtttgggagcaa actaaagtttgggaaggttttataagatgctgccagcgaatgaagcctcaatcgttccaa gttttgctacaacttccaccagcttggttgtctaatgtgtttgaaactttccccgatttg agggaaccattacttcagtatgttaataagcttaccccacaacagcggcaacacatctct ccagccatcgtatctgtgctcgaggtttcaccagaacaagctgctctaaaagctcagagg gaaatgcaggagaaacttgctcggagcaaggagcaggagaaactcgcccaggagtgggag agaaaggaaagagacagaaaagctgctctccaagctcagcaagagataatgaggataaat gcacagctggctaaacaagaaagcgagcgacagaaacgcaaccaagaagcctcgttggac gtgaaagttgaaacaaacaaagaaggcgacggacttcttggggcttttcccggcagtaac cctcaacccagtctacttggtcccccacccacaaatgctacacccttgttaaacccaccc atgcaagtacaagccgatataaaaccagtgattctcccagcaagttcaactccccctgta tccactaatccccctgctctaaacacaacagcatctccagccaaagccatcacccccacc cctttacccccagccacccatctaccaccccccggtataattctgccccctaacctaccc ttacccccattccaatacaatgtcccacccccaacactaatggtagctcctcctgctgct ataccaccttcatctacaagtaaccagtctcctgcccaagctgaagtgaagaccgagcga agcgcgacaccgacacaagatgaatctgatgatgttaactaa

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