Ciona intestinalis (yellow sea squirt): 100184061
Help
Entry
100184061 CDS
T01056
Name
(RefSeq) integrin alpha-M-like
KO
K06461
integrin alpha M
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
100184061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100184061
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cin04147
]
100184061
04515 Cell adhesion molecules [BR:
cin04515
]
100184061
04090 CD molecules [BR:
cin04090
]
100184061
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
100184061
Membrane trafficking [BR:
cin04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
100184061
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100184061
Cell adhesion molecules [BR:
cin04515
]
Integrins
Integrin alpha subunits
100184061
CD molecules [BR:
cin04090
]
Proteins
100184061
Glycosaminoglycan binding proteins [BR:
cin00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
100184061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_3
FG-GAP_3
Integrin_A_Ig_1
VWA_2
FG-GAP_2
Motif
Other DBs
NCBI-GeneID:
100184061
NCBI-ProteinID:
XP_026691356
LinkDB
All DBs
Position
8:3935510..3948195
Genome browser
AA seq
1236 aa
AA seq
DB search
MYRMRRSIGALSCLVAIVYCFVKIKAQNIETRAHHSLSPVKSDLSVIHFGASVVVKKTAS
NSQAFVGAPLDERKNGSLYKCTFDGRTSGSSLCIRETAFDKTGAMGISISMNTDDENIYV
CGNQHVINCPKSQLQNRMIGACYKKSTTTSAVTLLKSPCTTACPTEGLTADIIFVVDESG
SVDVDEYRDSLNWMKQVISSFRSYIDKGDVHVGVIGFSRLNNIDTKVRIRLQAWSYTSLT
SQINNMVNVRSLNGLTYIGYAINLTITEFDDHGRESVPKEMILLTDGAATKPENVKPAAE
RARANGIVTVSVGVGSRVDETQLLTIAGNASRVFKATNYDNLDSVVEGVKSTIQDTASVK
LEGDITNTTNELAECQLGISSHVTKNNNMYVGAVGSYDRAGAVVDYSAVAGSVSTQYRSV
LNITQYANIASASGISANLSDTYLGYSVTSGNFFGGNGEYVASGAPRYNSKGMVAVYEAN
NVMESSSKFLLLHPSETSGLWQLGAYFGHSVCAVDINKDSLDDLIVSAPLFNDVATGYDQ
GRVFVYINDPKDTKLQKWVSASYHPQMLSGSNAKGARFGMSVAVVGDVDLNGYDDIAVGA
PFEEIYSTGSGTVYIYFGSSEGLIETRKQRILGKSVSPSLKTFGGFITSGAGSKNDVDGN
GYSDVIISSPASDNIIILRARPIVKVQTQITLKPPSIDLINCLSSSVAPCTSAAVCLSAF
YTDNRTLTAPAPLNVTMKLDSLLGNPVNKRLVFAGTTSSTHTMVYNVTSRSSCFTLPVRL
NSAYFASTLSTGDFGIAARVEASYDYTVNHKNTIMSAVIDPLLPRVTTADWTLEKQCSEI
NGTRCSHDLKIETVFSVPSLGEPLILRSNPGIISINVTITNLGPDHSYFTRVNVVGNLDL
NKVVGACVTVAPTNTPNDTTVSFKSENSILQGFMLKGEKCSFILEYSLLSLTKRAMVQDI
LLKGSVYSGVNDTASVIDPIMHNNQFEFRKKVLYTATIVQTSNSAPNAMFYNRTDSTTAS
IYNISNSYLGDSKYAVFHNHSVYNRGPNXXAKASLVFTWPRQTKEGLPLLYLYNFQCLPS
TLCHCETLNKVNEYGLAINNETGLKNISIDFNSNTTLPSETTCNDVECDSIMCSVEQLGK
FSTVVVTSSFKVWLPTLTQNKLVTKLSSKTSLNVTDSPIYNAAATTTKATTVVSEYVPPV
PVYESEINLGLLIGAIVGGICLLVAIVLIMWKVYLI
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgtatagaatgagaaggtctataggagcgttgtcttgcctcgtcgcaatagtttattgt
tttgtgaaaataaaagcacaaaatatagaaacaagagcacaccattctctttctccggta
aaatcagatttatctgtgattcatttcggagcttcagtagtggttaaaaagactgcgtcg
aattctcaagcgtttgttggcgcaccgttggacgagagaaaaaatggatctttgtataaa
tgtacatttgatgggagaactagcggaagtagtctgtgcattagggagactgcgttcgat
aaaactggggcaatgggaatttctattagcatgaacaccgatgatgaaaatatatacgta
tgcggaaatcaacacgtcatcaactgtccaaaatctcagctacaaaaccgaatgattgga
gcgtgttataaaaaatcgacaaccacatcggcagttactttgcttaagtccccttgcacg
actgcctgtcccacggaaggattaactgccgacatcattttcgtggtggacgaatcggga
agtgtggacgtagacgaatatcgggattcattaaactggatgaaacaagttatttcatcg
tttaggtcttatatcgataaaggtgacgttcacgttggtgtcattggcttcagcaggctg
aacaatattgacacaaaagtccggatccggttacaagcgtggtcatatacctcgcttaca
agccaaattaacaatatggttaatgtgagatcgctgaatggattgacgtacattggatac
gcgataaacttgacaattactgagtttgacgaccacggccgcgaatctgttccgaaagaa
atgattttgcttacagatggtgctgccaccaagcctgaaaacgttaaacctgctgccgaa
agggccagggccaatggaattgtaacagtttcagtgggggtcgggagtcgtgtagacgaa
acacaacttctgacaattgccgggaacgcttctcgtgtgtttaaagcaactaactacgac
aacctggatagcgttgtagaaggagttaaatctactatacaagatacagcatcggttaaa
ttagaaggtgacattacgaataccaccaatgagcttgctgaatgccaacttggaatttca
tctcatgttacaaagaacaacaatatgtacgttggtgcggttggttcgtatgatagagca
ggagctgtggtcgattacagcgcggttgcaggaagcgtatcgacgcaatatagaagcgtg
ttgaacattacacaatacgccaatatagcatctgcaagcggaataagtgccaatctatca
gacacatatctcggttactctgttacgagcgggaacttttttggaggaaatggtgaatat
gttgcaagcggagctccgagatacaactcaaaagggatggtcgctgtatacgaagcaaac
aatgtaatggagtcgtcgtccaagtttcttcttctgcatccgagtgagacgtctggtttg
tggcaattaggagcttattttggacattctgtgtgtgctgtggacatcaataaagattct
ctcgacgacttaattgtttctgcaccgttattcaatgacgttgctacaggttatgaccaa
ggacgagttttcgtttacatcaacgatccgaaagacaccaagttacagaaatgggtatct
gcgtcataccacccacaaatgctcagtggatcaaacgcgaaaggagctcgatttggaatg
tcagtcgcagtagttggtgacgtagatttaaacggatatgacgacatagcagtgggagca
ccatttgaggagatttattcaaccggtagcggcactgtttacatttatttcggctccagc
gagggactgattgaaacacgaaaacagcgcatattgggaaaatctgtttcgccatcatta
aaaacattcggcgggtttattacatccggagcaggatccaagaatgacgtggatggaaac
ggatattctgacgttataatatcatcacctgccagcgataacatcattatcttaagggct
cgaccgattgtgaaagttcaaacacaaatcactttgaaacctccgtctatcgacttaatc
aactgccttagtagctcagttgctccttgtacaagtgcagcggtgtgcttgtccgcattc
tacacggataaccgaactttaacagcaccagcacctcttaatgttactatgaagttggat
tctttactgggcaacccagttaataaaaggctcgtgttcgctgggacaacgtcatccacc
catacaatggtgtataacgtcacttcgcgaagttcatgcttcactttgccggttcgacta
aactcagcatattttgcatcgactttatctacgggagatttcgggatagcggcccgagtc
gaagccagctatgattatacggtgaaccataaaaacacgatcatgtcagcagtcattgac
cccttgttgccaagggttactacagcagactggacgttagaaaagcaatgttccgaaata
aatgggacgagatgcagtcacgatttgaaaatagaaacagtattttccgtgccatcactc
ggagaacctttgattctgcgttcgaatccaggaataatatcgatcaatgtaacgatcacc
aatcttggtcccgaccattcctactttacaagggttaacgtcgttggaaatcttgatcta
aacaaggttgtcggtgcatgtgttaccgtagctccaactaacacaccaaatgacacaact
gtgagtttcaagtcggaaaactcaattttgcaaggttttatgctgaaaggagaaaagtgt
tcttttatattggaatactcgctactgtctttaacgaaaagggcaatggtgcaagatatt
ctactaaaaggatccgtgtattccggcgtcaacgacacagctagcgttatagaccccatc
atgcacaacaaccaattcgagttccgtaaaaaagttttgtacacggccacaatcgttcag
actagcaactcggcgccgaacgctatgttctataaccgcaccgattccactacagcaagc
atttataacatcagtaatagttatttaggagactcaaaatatgctgtgtttcacaaccac
tcggtttacaatagagggccaaaccnnnttgcaaaagcttctcttgtgtttacatggcca
agacaaaccaaggaagggctaccactgttatatctatacaatttccaatgcttaccttca
actttgtgtcattgtgaaacgctgaacaaagtaaacgaatacggacttgcgataaacaac
gaaacaggtttgaaaaatatttcaatcgacttcaattctaacacaactctaccgagtgaa
actacctgcaatgacgtggaatgcgactccatcatgtgcagtgtcgagcaacttggaaag
ttctccacagttgtggtgacgtcatcatttaaagtctggttgccaacattaacacagaat
aaactcgtaacaaaactctcaagcaagaccagtcttaatgtaacggattctcccatctat
aatgcagcagcaacaacaacaaaggcaactactgttgtatcagaatacgttccaccggtt
ccagtatatgaaagcgaaatcaacttaggacttctcataggagcaatagttggtggaatt
tgtttgcttgttgctatcgttcttatcatgtggaaggtatatttaatctaa
DBGET
integrated database retrieval system
